KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0844450-01
Entry
Os03t0844450-01   CDS       T02163                                 
Symbol
Os03g0844450
Name
(RAP-DB) Similar to 3' exoribonuclease family domain 1-containing protein.
  KO
K12587  exosome complex component MTR3
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os03t0844450-01 (Os03g0844450)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os03t0844450-01 (Os03g0844450)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Os03t0844450-01 (Os03g0844450)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
RAP-DB: Os03t0844450-01
Position
chr03:join(35494307..35494460,35495557..35495635,35496306..35496408,35496510..35496630,35496959..35497047,35497139..35497288,35497369..35497455)
AA seq 260 aa
MSAAATAGTYSPASAAGEKRRERKEELRRHLAEDADWPRADGRSFHDCRPAFMQTGPTTA
ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQGTDNKEYS
AMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSV
SVSCFGKNIIIDPTSDEEAWQDGSLMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDA
CSKLCDILRERLKDASSLAE
NT seq 783 nt   +upstreamnt  +downstreamnt
atgtcggcggctgccaccgctgggacctactctccggcttctgccgcgggggaaaagcgt
cgggagaggaaggaggagctgcggcgccacctcgccgaggacgccgactggccccgcgcc
gacggccgctccttccacgactgccgtcctgcatttatgcaaacaggaccaacaaccgct
gcatcaggatctgcttatgcagaatttgggaagacaaaggtcattgtgtcagtgtttgga
ccgagagaaagcaagaaagcaatgttgtacagtgatactggtagactcaattgcaatgtg
agctacacaacatttgccactcctatacgtgggcagggaacagataacaaggagtactcc
gcaatgcttcataaagctctggaaggcgcagtgatgttgcacacttttccaaagaccact
gttgatgtttttgccttggttcttgagtctggtggcagtgatcttcccatcattatttct
tgtgctagtcttgcgttggctgatgctggaatcatgatgtatgaccttgttacatcagta
tctgtgtcctgttttgggaagaacataatcattgatccaacctctgacgaggaagcatgg
caagacggcagccttatggtggcgtacatgccagcccgcaaagagatcacgcagctaact
cttactggagagtggtctgatggcaaaatcacgaacgcggtggagctctgcatggatgcc
tgcagtaagctctgtgacatacttcgggagcgcttgaaagatgcttccagcttggctgag
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (2)   
   Pfam (2)   
All databases (9)   

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