KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0613400-00
Entry
Os04t0613400-00   CDS       T02163                                 
Symbol
Os04g0613400
Name
(RAP-DB) Similar to Cell differentiation protein rcd1.
  KO
K12606  CCR4-NOT transcription complex subunit 9
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os04t0613400-00 (Os04g0613400)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os04t0613400-00 (Os04g0613400)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Os04t0613400-00 (Os04g0613400)
SSDB
Motif
Pfam: Rcd1
Other DBs
RAP-DB: Os04t0613400-00
Position
chr04:complement(join(31102526..31102729,31101806..31101877,31101494..31101583,31101280..31101322,31100759..31100865,31100074..31100169,31099284..31099474,31099129..31099198,31098918..31099025))
AA seq 326 aa
MANLQPSLSIPPSFAGASPPSPSPIGGGGVGGGVGQPAKDMKMASAEQLVLDLCDPELRE
NALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNALAL
LQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVIS
FLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANM
VVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWL
QQLLLNVTGAGMGAAPQPGLDHMMGI
NT seq 981 nt   +upstreamnt  +downstreamnt
atggcgaatctgcagccctcgctttccattccgccctccttcgccggggcctcgccgcca
tcgccttctccgatcggcggcggtggcgtgggcggcggggtggggcagccagccaaggat
atgaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgag
aacgccctcctcgagctctcgaagaaaagagagatatttcaagatctggccccacttctt
tggcattcttttggaacagttgctgcacttcttcaggaaattgtgtcaatctactctgca
ctttcacccccaacattgtcaccaggtgcatcgaaccgagtctgcaatgcacttgcactt
cttcagtgtgttgcatctcaccctgagaccaggatccttttcttaactgctcatattccc
ctgtacctgtacccattcttgaatactaccagcaagacaagaccttttgaatacctgcga
ctcaccagcctgggtgtcatcggtgcacttgttaaggttgatgatactgaagttatcagt
tttctgctgcaaactgaaataattcctctgtgtttgcgtaccatggaaatgggaagtgag
ctgtcaaaaactgtggccaccttcattgttcagaagattctcctcgatgatgttggattg
cgctacatttgtgccactgctgagcgtttctttgctgtaggcagtgttttagcaaacatg
gtggtttcacttgctgagcagccttccacaaggttgctgaagcacattatccgatgttac
cttaggctgtcagacaattccagggcatgtgctgcactacaaacttgcctccctgacatg
ctgaaggatggcacgttcaataactgtcttagggatgatcctacaacaaggcgctggctc
cagcaattgcttcttaatgtgacaggcgcaggcatgggagctgctcctcagccaggcctg
gatcacatgatggggatataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (8)   

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