KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0519500-01
Entry
Os05t0519500-01   CDS       T02163                                 
Symbol
Os05g0519500
Name
(RAP-DB) Similar to Periodic tryptophan protein-associated region; WD40-like.
  KO
K14558  periodic tryptophan protein 2
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    Os05t0519500-01 (Os05g0519500)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dosa03009]
    Os05t0519500-01 (Os05g0519500)
Ribosome biogenesis [BR:dosa03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    Os05t0519500-01 (Os05g0519500)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 RMC1_N WD40_like Ge1_WD40 WDR54 YrhK Nup160
Position
chr05:complement(join(25792317..25793522,25791448..25791699,25791255..25791347,25790704..25791075,25790141..25790231,25788809..25788939))
AA seq 714 aa
MNYRFHNLLGAPYRGGDAVFAGDSSVLLSAVGNRVASTDLSASSSLTLPFESSSNVTRLA
VSPSGDFLLSVDDAGRALYANLGRRAVLHRIAFKSAPSAVRFSPDGNLIAVAVGKLVQIW
RSPAFRKEFFPFHLLRTIPGFAAGVTAFDWSPDSSFLLASCKDLTARLLPVKKGLGGKPF
LFVGHRAAVVGAFFATDKKTGRVTGAYTITKDGAIFTWNLVEGSDDSPPPSPGTPEQEAV
QDGEAELDGDEPELDGGSRKRKSFGESEEPDTTPLHFTRWELQKKDFFMQSPAKLTACDY
HRELDMVVVGFSNGVFGLYQMPDFVCLHLLSISREKITTAIFNSLGNWLVFGCAKLGQLL
VWEWRSESYILKQQGHYFDVNCIAYSPDSQLLATGADDNKVKVWTVSSGFCFITFSEHTN
AVTAVHFMANNHSLLSASLDGTIRAWDLFRYRNFKTFTTALPRQFVSLTADQSGEVICAG
TLDSFEIFVWSMKTGRLLDILSGHQGPVHGLMFSPINAILASSSWDKTVRLWDVFESKGA
VETFQHSHDVLTLAYRPDGRQIACSTLDGLIHFWDPFDGLLMYTIEGRRDIAGGRLMTDR
RSAANTSIGKYFTTLCYSADGTYILAGGNSKYICMYDVGEQVLLRRFQITRNLSLDGVLD
FLNSKKMTDAGVLFLVGSWMMCVHTLLKFCHPVLLKRSRKNISCITSMEYLWVS
NT seq 2145 nt   +upstreamnt  +downstreamnt
atgaactaccgcttccacaacctcctgggcgcgccgtaccgcggcggcgacgccgtcttc
gccggtgactcctccgtcctcctctccgccgtcggcaaccgcgtcgcgtccaccgacctc
tccgcctcctcctccctcacgctccccttcgagtcctcctccaacgtcacccgcctcgcc
gtctccccctcgggcgacttcctcctctccgtcgacgacgccggccgcgcgctctacgcc
aacctcggccgccgcgccgtcctccaccggatcgccttcaagtccgccccctccgccgtc
cgcttcagccccgacggcaacctcatcgccgtcgccgtcggtaagctcgtccagatctgg
cgctcgcccgcgttccgcaaggagttcttccctttccacctgctccgcaccatccctggc
ttcgccgccggtgtcaccgccttcgactggtctcccgactcctcgttcctcctcgcctcc
tgcaaggacctcaccgcccgcctcttgcctgtcaagaaaggccttggaggcaaaccattc
ctcttcgttggccaccgcgccgccgtggttggcgccttcttcgccacagataagaagaca
gggagagtcactggggcttacacaattaccaaggacggagctatctttacatggaatttg
gtggaaggaagtgatgattcgcctccaccttcaccagggacgccagagcaggaggcggta
caggatggtgaggctgaattggacggtgacgagcccgaattggatggcgggagcaggaaa
aggaagagtttcggagaatcggaagaaccagacactaccccgctgcatttcacaaggtgg
gagctgcagaaaaaggacttcttcatgcagtcaccggctaagttaacagcctgtgattac
catagggagcttgacatggtggtggttggtttctctaatggtgtatttgggctgtaccag
atgccagactttgtgtgcctccacttactgtcaatatcaagggagaagatcactactgct
attttcaacagtttggggaattggttagtttttggatgtgccaaacttgggcaattactg
gtgtgggagtggcgatcagagagctacattttgaagcagcaggggcactactttgatgtg
aactgcattgcatactcaccagactcccaattactggccactggagctgatgataacaaa
gtcaaggtctggacagtctcctctgggttctgtttcataacattttcggagcatacaaac
gctgttactgcagttcattttatggccaataatcattctcttctcagtgcctcccttgat
gggactattcgagcatgggatctgttccgctatcgaaatttcaagacatttactactgca
ttgcccagacaatttgtttctttaacggcagatcagagtggagaagtaatatgtgctgga
acacttgattcatttgagatatttgtttggtcaatgaagactggtcgtttgttggatata
ctcagtggtcaccaaggaccagttcatggcctaatgttttcgccaatcaatgctattttg
gcttcatcatcatgggacaaaacagttcgcctttgggacgtatttgagagcaagggtgca
gtggaaacttttcaacattcacatgatgttcttactttggcttatcgccctgatggaaga
cagatagcatgcagcacactagatggcttaatccatttctgggatccatttgacggcctg
ttgatgtatacaattgaaggccgcagggatattgccgggggtcgtctcatgactgacaga
agatctgctgctaatacaagtataggaaagtacttcacaacgttgtgctattctgctgac
gggacttatattttagctggaggaaacagcaaatatatatgcatgtatgatgttggagaa
caggtgctcttgcgtagattccagatcacccgcaatctctcgttggacggagtacttgat
tttctgaactcaaagaagatgacggatgctggtgtacttttccttgttggatcttggatg
atgtgtgtacacaccttactgaaattttgtcacccagttttgttgaaacgatccagaaag
aatatatcatgcatcacaagtatggagtacttgtgggtttcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (15)   

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