KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os06t0589700-01
Entry
Os06t0589700-01   CDS       T02163                                 
Symbol
Os06g0589700
Name
(RAP-DB) Similar to Poly(A)-binding protein (Fragment).
  KO
K13126  polyadenylate-binding protein
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015  mRNA surveillance pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Os06t0589700-01 (Os06g0589700)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os06t0589700-01 (Os06g0589700)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os06t0589700-01 (Os06g0589700)
   03041 Spliceosome [BR:dosa03041]
    Os06t0589700-01 (Os06g0589700)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     Os06t0589700-01 (Os06g0589700)
   mRNA cycle factors
    Stress granule specific factors
     Os06t0589700-01 (Os06g0589700)
Spliceosome [BR:dosa03041]
 Complex C
  Other components
   Complex C specific factors
    Os06t0589700-01 (Os06g0589700)
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 DUF6171
Other DBs
RAP-DB: Os06t0589700-01
Position
chr06:complement(join(23139142..23139447,23138959..23139036,23138766..23138855,23138292..23138540,23137639..23137857,23136672..23136929))
AA seq 399 aa
MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH
DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA
TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAP
HQFNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQPGQRSGPPHGGMPRHLHNPH
QMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPMQPMQQAVKHVVPVGELQAPSNNL
QTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDK
VAEAMKVLELEATATAAAAAAASGSGDGDAAAPSSSSAA
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgagagatgcaaatggattgtcgagatgctttgggtttgtaaactttgagaaatcagaa
tgtgctagaaatgcagttaaaaatctcaatgggaagtccattggtgatatggtgttatat
gttgcaagggctcagaaaaaatcagaaagacaagctgagttaaaagcgaaatttgagcat
gacaaaaatcagaaatttgagaagcttcaaacagtcaatctatacttgaagaatttggat
gatgacatcaatgatgagcatcttaggaagttgtttgaatgttttggtgaggtagcatca
tgcaaggtcatgcttgattcgcatggaaggagcaagggttgtggatttgtatcttttgca
actgttgaagacgctaacaatgctattttaaaaatgaacgggaaaatggttgggaaaaag
ccattatatgttgccgtagctcaacggaaggaggagagaaaggcatttttagcggcacat
tttgctcgtgttagagccctagcaacaatggcacctacattagggccaaacattgctccc
catcagttcaattttggccatggtgtgcctgccttgttcccaccaccaccacctgcaggc
tttgggttccaaccaaattttgttccaaacatgatgatgccatataacatgcaaaggcag
cctggccagaggagtggtcctccgcatggaggaatgcctagacatctgcataatcctcac
cagatgtttcaccaaaatgccaaccagggcttcagacacatgccaaatcgtaggaatggt
gtggccaacccagcaatgttgcatcagcaccatcgcttctctagcccaatgcagccaatg
caacaagctgtcaagcatgtggtgcccgtgggggaattgcaagctccaagcaataacctt
cagacttccttggcttctgcgaacccggaacaacaacgagagattcttggcgacatgttg
ttcccgctcgtcgaacagctggtgaacgagaaagcttataaggtgactgggatgctgctt
gagctggacaagactgaagttctgaacctcgtagagtctccagatactctccgggacaag
gttgctgaggccatgaaggtgctggagttggaggctaccgccaccgccgccgccgccgcc
gccgcttcaggctccggcgacggcgacgccgccgcgccgtcctcctccagcgccgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system