KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0159900-01
Entry
Os08t0159900-01   CDS       T02163                                 
Symbol
Os08g0159900
Name
(RAP-DB) DEAD-like helicase, N-terminal domain containing protein.
  KO
K12811  ATP-dependent RNA helicase DDX46/PRP5 [EC:5.6.2.7]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os08t0159900-01 (Os08g0159900)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dosa03041]
    Os08t0159900-01 (Os08g0159900)
Enzymes [BR:dosa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Os08t0159900-01 (Os08g0159900)
Spliceosome [BR:dosa03041]
 Complex A
  U2 snRNP components
   U2 related factors
    Os08t0159900-01 (Os08g0159900)
 Complex B
    Os08t0159900-01 (Os08g0159900)
SSDB
Motif
Pfam: DEAD Helicase_C
Other DBs
RAP-DB: Os08t0159900-01
Position
chr08:complement(3515530..3518679)
AA seq 1049 aa
MGSSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERR
HREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKR
RRRSSHHHHHHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEEQKQLDEEMETRRRRI
KEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDEEGNQE
DGKKSDDNGGSGAGAMDVDVPNGGDNANGANAMDEDEIDPLDAFMNSMVLPEVAKLESMP
AANVDDKNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFM
KRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVP
KPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVL
PMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQ
ISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQ
NTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFR
LLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSN
VCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEE
RYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARK
SAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAASNANQQ
TQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFP
QNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAK
AELKRVLEDCANHALNLPGSAQTGKYSVI
NT seq 3150 nt   +upstreamnt  +downstreamnt
atggggtctagcgacgaggccggctcctccaagcaccaccgccgcgacaaggagaaggac
cgcgagcggtcctcctcccgccaccaccgcgaccgcgaccgcgagagatcctcctctcgc
caccaccaccgcgaggaccgggatgacgaccgggatcgggaccgggaccgggagcgccgc
cacagggagaaggagcgggatcgcgaggagcggaaggcgcgggagcgggaggagcgggag
aaggagaaggagagggagcgtgcgcggcggcgcgaggagagggaccgcgaggagaggtcg
aggaggcgggaggcggcggcggaggaggaggaggaggatgtggaccgcgaccgcaagcgc
cgccgccggtcgtcgcaccaccaccaccaccaccgcgacgcggagccggaggggccggct
tcgggggccagggaggaggaggtggtggatgtggaggaggccgagaggcggcgccagaag
aagaaggaggaggagcagaagcagctggacgaagagatggagacgcggcgccgccgcatc
aaggagtggcaggagatgaagcgccgcgaggaggagacgaagcgccgcgagcaggaggag
gccggagttggcacctcagccgccgccgccgcggcccccgcagaagcagaagatggcggc
aatgccgggaagaagtggaccttggatggcgaggagtctgatgaggaggggaaccaagag
gatggtaagaaatccgatgataatggtggttctggtgccggtgccatggacgttgatgtt
ccaaatgggggtgataatgcaaacggcgccaatgctatggatgaagatgagattgatccg
cttgatgcgttcatgaactcgatggtattgcctgaggtcgcaaagcttgagagcatgcct
gctgccaatgtggatgacaagaatgataagagtgctaaggatgctgtgactaatggggat
aaaaaggggccaaagaaggtgatggggagaattatacaaggagaagactcagactcggat
tatgcagatgacgaggatgatgagggtggttccgaagatgaggatgatgaggagttcatg
aaacgtgtcaagaagacaaaggcagaaaagttggctattgttgaccattctaagatcgac
taccagccgttccggaagaatttctacattgaggtgaaggatattacaaagatggcagct
gaggaagtggcagcttatcggaagcagttggagctcaaggtgcatgggaaagatgtaccc
aagccaataaagacatgggtgcagagtgggcttaccagcaagctccttgatacaatcaag
aaacttggtttcgagaaaccgatgtctatacaggcacaagcactgccgatcataatgagt
gggcgtgattgtataggaattgcaaagactggatcaggcaagactctagcatttgtcctg
cctatgctgaggcatgtcaaagatcagccggctgttgttcctggagatggcccaattggg
cttataatggctcctactagagagcttgtggtgcagatacattcagacattaagaagttt
tcgaaggcgcttggcatcaactgtgttgctatctatggaggttctggagttgcccagcag
atcagtgaactgaagaggggtgctgaaattgttgtttgtacaccaggcaggatgattgat
attctttgcacaagcagtgggaagattactaatcttcggagagttacattcttggtgatg
gatgaagctgataggatgtttgatatgggttttgagcctcagattactcggatagttcag
aatactcgtccagataggcagacagttcttttctcagccacttttccacgtcaggtggag
atactggcccgtaaggtgctgacaaagcctgttgagatccaggtgggtgggaggagtgtc
gtcaacaaagatatcacacaactggttgaggtgcggccagaaaatgagaggttctttagg
ctgttggagctgcttggagagtggtttgataaaggtaaaattcttgtttttgtccattca
caagataaatgtgattctctactcaaagacctgttccagcatggatatccatgcctatcc
ctgcatggtgggaaagaccagactgaccgtgaatcaacactagctgatttcaagagcaat
gtgtgcagcttgctgattgctaccagtgttgctgctaggggtttagatgtcaaggagctt
gagcttgttgtgaattatgatgtcccgaaccactatgaggattatgttcatcgtgttgga
cgaactggacgtgctgggaggaagggatttgccgtgacttttatttctgaggaagaggag
cgttatgctccagaccttgttaaagctttggagctctcagagcaggctgttccagaggac
ctgaaaggtctagctgatcgttttatggcaaaggtgaagcagggaacagagcaggcccat
ggaacaggatatggtggaagcggtttcaagttcaatgaagaggaggatgaagcacggaaa
tctgcaaagaaggctcaggcaagggaatatggttatgaggaggacaagtcagattcagat
tctgatgaggaaggaggggttcgtaaggcgggaggtgaccttgcggcacaagctattgct
gctgctcaagctgctgctgctatggttgcagcaaaggctgctagcaatgccaaccagcaa
acacaaggcacttctgtagggcccttgcttcctctagccattgcttcaaacacacagaat
aacgaggccacagcacgtgcactgcaggctgcatttaacatacagcaaaatctggcaagg
atacaagcacatgcagtcccagaacattatgaggctgagcttgagattaatgatttccca
caaaatgcccgctggaagatcactcacaaagaaacattgggtcctatccaggaatggacg
ggtgctgcaatcactacaaggggaaccttttttcctcaaggaaaaattgttggtgctaat
gaacgcaagctgtacctgttcatagagggccccactgagctatctgtcaagaaggcgaaa
gcagaattgaagcgtgtccttgaagattgtgccaaccatgctctgaaccttcctggttct
gcccaaactggaaagtactctgttatttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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