KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0444100-01
Entry
Os08t0444100-01   CDS       T02163                                 
Symbol
Os08g0444100
Name
(RAP-DB) Similar to Splicing factor 3b, subunit 5 (Splicing factor 3B subunit 10).
  KO
K12832  splicing factor 3B subunit 5
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os08t0444100-01 (Os08g0444100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dosa03041]
    Os08t0444100-01 (Os08g0444100)
Spliceosome [BR:dosa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    Os08t0444100-01 (Os08g0444100)
 Complex B
    Os08t0444100-01 (Os08g0444100)
 Complex C
   U2 SnRNP specific factors
    Os08t0444100-01 (Os08g0444100)
SSDB
Motif
Pfam: SF3b10
Other DBs
RAP-DB: Os08t0444100-01
Position
chr08:complement(join(21635110..21635115,21634168..21634253,21633961..21634084,21632455..21632502))
AA seq 87 aa
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAEN
ESIGRERYNFMQKMLLPCGLPPERDED
NT seq 264 nt   +upstreamnt  +downstreamnt
atgcaggctagcgacaggttcaacataaattctcaacttgagcatcttcaagcgaaatat
gtgggcacagggcatgctgacttgaatcgatttgaatgggcagtaaacatccaaagggat
agctatgcatcctatattgggcactatccaatgctggcatatttttccattgctgagaat
gaatcaattggaagagagcgttacaattttatgcagaaaatgctacttccgtgtggtctg
cctcctgagagagacgaagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (8)   

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