KEGG   Danaus plexippus (monarch butterfly): KGM_203690
Entry
KGM_203690        CDS       T04344                                 
Name
(GenBank) RNA polymerase 2 largest subunit
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
dpl  Danaus plexippus (monarch butterfly)
Pathway
dpl03020  RNA polymerase
dpl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dpl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    KGM_203690
  09124 Replication and repair
   03420 Nucleotide excision repair
    KGM_203690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpl03021]
    KGM_203690
   03400 DNA repair and recombination proteins [BR:dpl03400]
    KGM_203690
Enzymes [BR:dpl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     KGM_203690
Transcription machinery [BR:dpl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     KGM_203690
DNA repair and recombination proteins [BR:dpl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      KGM_203690
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: OWR53673
UniProt: A0A212FIV3
Position
Unknown
AA seq 1895 aa
MATTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGTGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQDKKIIITAERVYEILKHITDEDSFILGMDPKFARPDWMIV
TVLPVPPLAVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHP
DDEDDGVNRWISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHEIAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNMPTVK
LSNKAFEKKFKFDPTNERYLKRIFHEDIIKELTESGYVIADLESEWEQLCKDREILRQIF
PSGESKVVLPCNFRRMIWNVQKIFHINKRMSTDLSPIKVIQGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTFCTKYVSEDYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITDQGEFK
AIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVAGGMYFGVGTPSMT
PLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSSSWSPQPGS
PGSPGAPLSPYASPAGASPSYSPTSPVYAAPSPSVTPSSPVYSPTGPSYSLTSHNYSPTS
PIYSPNSPRYSPRYSPTSPGYSPPSPRYSPTSPSYSPTSPAYSPNSPSYSVKSQDYSPTS
PNYSPASTSYSPSGPVYSVNSQGYSPSSLNYSPSNLVYSPTSQNYSPSSPNYTPPAPPYS
PTSHSYSLPYSPASPSISPSSPKYSPSPNYSPTSPSVSGGSPTYSPTSHQYGPKSPQYSP
SSTAYSPSSPQHPGSARYSPSSRNYLSSSPQYSPSSPRYSPSSNKYSPTNITYTPTSSNY
SPSSPAYSSSSGPSKYSPTSPNYSPTSPSHDDLDD
NT seq 5688 nt   +upstreamnt  +downstreamnt
atggcgaccacgaatgattcgaaggcgcctttgcgccaagttaaaagagtacaatttggc
attttatctccagatgaaatccgtcgcatgtcagtcacagaagggggaattcgtttccca
gaaacaatggaagggggaaggcccaaacttggtgggcttatggatcctcgacaaggggtg
atagacagaagttctcgatgccaaacctgcgctggaaatatgacagaatgccctggacac
tttggccacattgatttagccaaaccagtatttcatattggttttattaccaaaacaatt
aaagtattaagatgtgtttgtttttattgctcaaaattacttgtcagtcctacaaatcca
aaaatcaaagaagtggtaatgaaatctaaaggtcaaccacgtaaaaggttgacttatgta
tatgacctttgcaagggtaaaaatatttgtgagggtggagaagatatggatattggaaaa
gaaggggaagaaggcaaaaggggcacaggacatggaggttgtggtcattaccaaccttct
atcaggcggcaaggattagatctgacagcagaatggaaacatgctaatgaagacacacaa
gataaaaagataataataaccgcagaacgggtttatgaaatattaaaacacataacagat
gaagattcctttattttgggtatggaccccaaatttgccagacccgattggatgattgtc
acagtccttcctgtaccacctcttgcagtcagacccgctgtagttatgtttggatctgct
aaaaaccaggatgatttgacccataagcttgctgatattataaaagctaataatgagttg
atgagaaatgaacaatcaggagctgcggctcatgttctaactgacaatatcagaatgtta
cagttccatgttgcgacatttgttgataatgacatgccaggaatgcctaaggctatgcaa
aaatctggtaaacccttgaaagccataaaagcaagactaaaaggcaaagaaggtagaatt
cgtggaaatcttatgggaaaacgtgttgatttctcagctagaacagtaattacacctgat
cctaatttgcgcattgaccaagtaggcgtcccaagatctattgcacaaaatttgacattc
cccgagcttgtaacgcccttcaacattgatcggatgcaagaactcgtgcgaagaggaaat
gcacagtacccaggtgcaaaatacattgttcgggataatggtgaaagaatagatttaaga
ttccaccccaaaccatcagatttgcatctacaatatggctacaaagttgagcgtcacttg
agagatgatgatttggttatcttcaaccgacaaccaacactacataagatgagtatgatg
ggtcatagggtcaaagtattgccatggtcaacatttcgtatgaacttgagttgtacttcg
ccgtacaatgctgatttcgacggcgatgaaatgaatttacatgtaccccagtctatggaa
acacgagcggaagtagaaaacatacacataacgcctcgtcaaattataactccacaagct
aataaaccagtcatgggtattgtgcaagatacactgactgctgtcagaaaaatgacaaaa
cgagacgtatttttaacgaaagagcaagtaatgaacttgctaatgtttttaccaacatgg
gatggaaaaattccacaaccttgcatcctgaagccacaaccgctttggacaggaaaacaa
atatttactctgatcattcctggaaatgtcaatatggtgcgtactcattccacacatcct
gatgatgaggacgatggtgttaatagatggatatcacctggagacactaaagtaattgtg
gaacacggggaacttcttatgggtattctgtgtaagaaatctcttggtgcatctgctggt
tctttactgcatatatgtatgttggagttaggacatgaaatagctggtcgtttttacggt
aacattcaaactgtcatcaataattggctactattggaaggtcactccattggtattggg
gatacaattgctgatcctcaaacatatcaagaaatccaaagggctattgtgaaggctaaa
gatgatgtcatagaagttatacagaaagctcacaatatggagcttgagccaactcctggt
aatactctgaggcaaactttcgaaaatcaggtcaatcgtattcttaacgacgctcgtgac
aaaactggtggttcagccaaaaagtctctaacagagtacaataaccttaaagctatggta
gtcgctggttccaaaggatcaaacatcaatatttcacaagtcattgcttgcgtgggtcag
caaaacgtcgaaggaaagcgtattccgtttggcttccgtaagagaacattgccgcatttt
atcaaagacgattatggtccggaatcaagaggtttcgtagagaactcttacctggccggt
ttaacaccatctgagttttatttccacgctatgggaggtcgtgaaggtcttatcgataca
gctgtcaaaactgccgagactgggtatattcagcggcgtttgataaaggctatggaatct
gttatggtgcattatgatggcacagtccgaaattcggttggacaactgattcaactaaga
tatggtgaggatggtttagctggagaaacagtagagttccaaaacatgcccactgtaaag
ttatccaacaaggcatttgaaaagaaatttaagttcgacccaaccaatgaaaggtatttg
aagagaattttccatgaagatattataaaagaactaacggagtcgggttacgtgattgcc
gacttggaaagcgaatgggaacagctttgcaaagatcgtgaaatattgcgacaaattttc
cctagcggtgaatctaaagttgtattgccgtgcaacttcagaagaatgatttggaatgtt
caaaagattttccacatcaataagagaatgtcaacagatttaagtccgataaaagtgata
caaggcgtgaaagatcttttgaagaaatgtgtcattgtcgctggtgaagatcgtttgtct
aaacaagcgaatgaaaatgcaaccttactcttccaatgtttagtaagatctactttttgc
acgaagtatgtatctgaagattacagactatcaagtgaagctttcgaatggttgattgga
gaaattgaaacaagattccaacaagcacaagtcaacccaggtgaaatggttggggccctg
gcagcccagtctcttggagagccggctactcagatgacattgaataccttccactttgcc
ggtgtgtcatctaaaaacgtaactcttggtgtaccgcgtctaaaagaaatcattaacata
tcaaagaaaccaaaagcaccatctctaacagtattccttactggaggcgcggccagagat
gcagagaaagctaagaatgttctgtgtcgattggaacacacgacattgcgtaaagtcaca
gccaataccgctatctactacgatccagaccctcagaacacagttattgctgaagatcaa
gagtttgttaatgtttattatgaaatgcctgattttgatccaacaaagatttcaccttgg
ctattgcgtattgaactggaccgcaagagaatgacagacaagaagctgacgatggaacag
atcgctgagaagattaacgctgggttcggggatgatctcaattgtattttcaatgacgat
aatgctgaaaaattggttttgcgaataagaattatgaacaacgaggagagcaaattccaa
gacaacgacgaagaaacggtcgataaaatggaagacgatatgttccttagatgtattgaa
gcgaacatgttatcggacatgactttacagggtattgaggctatagcaaaagtgtacatg
cacttgccgcagactgaagcgaagaaacgcattattataacagatcaaggcgaatttaaa
gcgatcgcagagtggcttttggaaacagatggtacttcacttatgaaagtactgtcagaa
cgagacgtagatccagtgcggacattcagtaacgatatttgtgagatattccaagtgcta
ggtatagaggctgtgcggaagtcagtcgagaaggaaatgaatgctgtgttgcaattctat
ggtctttatgtaaactacagacatctcgctttgctttgtgacgtgatgactgccaaaggt
catcttatggctataacacgtcacggtattaacagacaagataccggagcactcatgagg
tgttcttttgaagagactgtagatgttttacttgatgcggctagtcacgctgaagttgat
cctatgagaggcgtttctgaaaatattatcatggggcaattgccgcgaatgggaaccggt
tgtttcgatttattactggatgctgagaaatgtaaacatggaatggaaatgggcggtcta
ggtgtcggaatgggagtcgcaggtgggatgtatttcggtgtcggcacaccttccatgaca
ccactgatgacgccctggtcaaaccaaaacactcccggatatggcagcagtgtttggtcg
cctggtcaagttggaagcagcatgacaccaggagggccatcattctcgccgtcgggagca
tcagacgcgtcagggttgtcacctgcttatagcagttcatggtctccacaaccagggtca
ccaggttccccgggcgctccgttatcaccttacgcctcgccagcgggagcgtctccctcg
tattctcccaccagtccagtatatgctgctccctcacccagtgtcacgccgtcctcgcca
gtctattcccccaccggaccttcttactctctaacatcacacaattactcaccaacgtca
ccgatctattcgccgaactcgccgagatactcaccaaggtattcgccaacgtcccccggc
tattcccccccgtcaccaagatactccccaacatctccaagctattcgccaaccagcccg
gcgtattcaccaaactctccgagctattcggtgaaatcacaagactattcaccgactagt
cccaactattctcccgcaagtacatcttattcaccgagcggacccgtgtattctgtcaac
tcgcaaggatattcgccatcgtctctaaattactcccccagtaatcttgtttatagtccg
acctcacaaaactactctccctcatcaccgaattacacccctccggcaccaccgtactcg
ccgacgagccattcatattcattgccctattcaccggcatctccaagtatttctccgtca
tcgccgaaatattcaccatcaccgaattattcgccgacatcaccatcggtttccggagga
agtcccacgtattcgccgacaagccatcaatacgggccgaagagtcctcaatattccccg
tcgagcacagcgtactcgccttcgtcacctcaacatccgggcagtgcgagatattcacca
tcatcgcggaactacttgtcatcttcaccacaatattccccatcatctcccagatattca
ccgtcttctaataaatattctccgactaatataacctacactccgacatcttctaattat
tcaccatcttcaccggcgtattcatcttcgtccggtccatccaaatattcgccgacatca
ccaaattattcgccgacctccccgtctcatgacgatcttgacgattag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (223)   
   KEGG ORTHOLOGY (1)   
   RefGene (220)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (239)   

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