KEGG   Drosophila pseudoobscura: 4814214
Entry
4814214           CDS       T01032                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
dpo  Drosophila pseudoobscura
Pathway
dpo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dpo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    4814214
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dpo03400]
    4814214
Enzymes [BR:dpo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     4814214
DNA repair and recombination proteins [BR:dpo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     4814214
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 RNA_ligase BRCT DNA_ligase_A_C
Other DBs
NCBI-GeneID: 4814214
NCBI-ProteinID: XP_001354322
UniProt: A0A6I8UEM3
Position
X:complement(37696285..37699585)
AA seq 916 aa
MDIATTVKFRDVCELFEKVKAAKKVQDKEDVLRSYYESFCRHREAFRQAAGLTDEQSENG
SSSFHSVLRLLLPSADTRRDNYGLQITALGRLYTRVLQLTRDSRDAIMLQHRTGSSFRDY
GDVVYAVLVSRCFNPPSDLRLNAIHEMLDTIANEDTSVKEEELIRFTEQASAREQKWLIR
ILLKSLGLGIGEQRIFGVLHPNAKDIYQRCSDLSHVCNLVADKVSDLKVSDTKITGNSHP
STVNLNAVIRPFHQIRPMLCERFPGDIQELMQSDVLYLETKMDGERFQLHIDRGRFMYLS
RNGVDYSNNFGESYSRGTLTPQLRGLLPLGLQTIILDGEMMVWDTNQKRYREKGENTDVK
NLKPDRSWRPCFVVYDLLYFNGQSLLDLTYIQRSYKLQKLIGEQQGVLQLMRGTKIGSIE
EFNKLFQQALDSNAEGIVLKKQSSIYQPGVRVGGGWYKDKADYIKGLITEFDVLIIGGFY
NRKRTFIDSFLLGVLQPMANSDSRHEVYSIGCVTNNTRQAVVLNHTLRPHWHDTTKEPPP
LWYHYMANEKIGSPDLWIDPHNSIILQVKAADLTPNSAFYTPKALHFPRIELKRDDKAWN
ECMTLQEFNQLCEGSGPIKKLNKRHLCLDDLTTKRKRLRMTPAERRRLGLAIYEKRYDVG
TSSSCTKLFEGLSFCILSGAPGQSKHKLQELAAKNGGCIVENPLPNDPKCFCIAGDQTFL
VKRLMQQQPCTSDIVRMEWLIRVCQEQELELRPKDLLSATEPLQDDLAEWFDKLGDSYTK
DFASVDELLELLQDIGKEELAVNHVSQSEINAFEDKLLGQATRNIFRDLHAYFYDPKGDE
LSKVLFLQNGGTLASESDPQLNLVFVCLSSDIDDNYFESWLHNHLSSYSGEVLNSAWIHQ
SHRERRLLKMSCFSFK
NT seq 2751 nt   +upstreamnt  +downstreamnt
atggatatagccacaaccgtaaagtttcgtgatgtctgcgagctgttcgaaaaggttaag
gcggcaaagaaagttcaagacaaagaggatgtgctgagaagctactatgagtcgttctgc
cgacatcgggaggcatttcgtcaggcggctggcttaacggacgagcagagtgagaatggc
tccagcagcttccactcggtcctgcgtctcctgttgcccagtgcagacactagaagggac
aactatggcctgcaaataacagctctgggccgtctctacaccagagtgctccagctaacc
agggactctcgcgatgccataatgctgcagcatcgtactggctcctcgtttcgggactac
ggagatgtggtctatgccgtacttgtgtcccgttgctttaatccgccaagcgatctgcgt
ctcaacgccatccacgaaatgctagatacaattgccaatgaagatacatcagttaaggaa
gaggaactgatacgcttcacagaacaagcctcggccagggagcagaagtggctaatccga
attctcctaaagtccctgggattgggcataggggagcagcgcattttcggagttctgcat
ccgaatgctaaggacatttaccagcgttgctcagatctaagtcacgtctgtaatttagtt
gccgataaggtatctgacctgaaagtcagcgacacgaagatcacaggcaacagccaccca
tcaactgttaatctgaacgcagtcataaggcccttccatcagatccgtcccatgctttgc
gagcgttttcccggcgacattcaggagcttatgcaatccgacgttctctatctggagacc
aaaatggatggcgagcgtttccagctgcatattgatcgcggtcgattcatgtacctttcc
cgaaacggagtggactattctaacaattttggcgaaagctatagccggggaacgttgacg
ccacaattgcgtggtctgttgccgctcggcctacagacgatcatcctcgatggcgagatg
atggtttgggacaccaaccaaaagaggtatcgcgaaaagggcgagaacacggatgtaaaa
aatctaaagcccgatcgaagctggcggccttgttttgtggtctacgatctactgtacttc
aatggccagagtctgctcgatttgacatacatccagcgatcctacaagctccaaaagttg
atcggcgaacagcaaggagtgctgcagctgatgcgcggtaccaagattggctcaatcgag
gaattcaacaaactcttccagcaagcccttgactccaatgccgaaggcattgttctaaaa
aagcagagctccatctaccagccgggagttcgagtcggcgggggatggtacaaggataag
gcagattacatcaagggtctcataaccgaattcgatgttctcatcattggaggcttttat
aatcgcaagcgcacatttatcgattcgtttctactaggcgttctccagccaatggctaat
agcgacagtcgtcatgaggtttacagcattggttgcgttaccaataatacgagacaagca
gtggtgctgaatcatacgctgaggccacactggcacgataccaccaaggagccgccgcca
ctatggtaccattacatggctaacgaaaagattggctccccggatctgtggatcgatcca
cacaattcgattatcttgcaggttaaggcggcggatttgacacccaatagtgccttctat
acgcccaaagctttgcactttccacgcatcgaactgaagcgcgacgataaggcctggaat
gaatgcatgacgctacaggagtttaaccagctgtgtgagggctctggtccgatcaagaaa
ctgaacaagcgtcacctgtgtttggatgatttgaccacgaaacgaaaacgtctacgcatg
acgcccgcagagcgcaggcgtctaggtctggccatatacgagaagcgctacgatgtcggg
acgagttctagctgcacaaaacttttcgaaggccttagtttctgcatcttgagtggtgcg
ccaggccagagcaagcacaaactgcaagaattggcagccaagaatggtggctgcattgtg
gagaatccgctgcccaacgacccgaaatgcttctgtatagcaggagatcagacgttcctg
gtaaagcgactaatgcagcagcaaccgtgcactagcgatattgtgcgcatggagtggctg
atacgcgtctgtcaggagcaagagcttgagctacgtccaaaagatttgctttcggccacc
gagccactacaggatgatttggccgaatggtttgacaaattaggagacagctatacaaag
gactttgcgagcgttgatgaactgctcgaattactacaggacatcggtaaggaggagctt
gccgtcaaccatgtgtcacagtccgaaatcaatgccttcgaagacaagttgctgggccag
gccacacgaaacatattccgtgacttgcatgcctacttctatgatccaaagggcgacgaa
ctgagcaaagttttgttcctgcagaatggcggcacgctggcaagcgaatccgacccccaa
ctaaaccttgtatttgtatgcctgtcttcggatatagacgataattactttgagtcgtgg
ctacataaccatttaagttcgtattctggcgaagtccttaactctgcatggatccatcaa
tcgcaccgtgaacgccgccttctaaaaatgagttgtttttcgtttaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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