KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_317527
Entry
DAPPUDRAFT_317527 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03030  DNA replication
dpx03410  Base excision repair
dpx03420  Nucleotide excision repair
dpx03430  Mismatch repair
dpx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DAPPUDRAFT_317527
   03410 Base excision repair
    DAPPUDRAFT_317527
   03420 Nucleotide excision repair
    DAPPUDRAFT_317527
   03430 Mismatch repair
    DAPPUDRAFT_317527
   03440 Homologous recombination
    DAPPUDRAFT_317527
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpx03032]
    DAPPUDRAFT_317527
   03400 DNA repair and recombination proteins [BR:dpx03400]
    DAPPUDRAFT_317527
Enzymes [BR:dpx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DAPPUDRAFT_317527
DNA replication proteins [BR:dpx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    DAPPUDRAFT_317527
DNA repair and recombination proteins [BR:dpx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      DAPPUDRAFT_317527
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     DAPPUDRAFT_317527
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2
Other DBs
NCBI-ProteinID: EFX81350
JGI: Dappu1_317527
UniProt: E9GG78
Position
Unknown
AA seq 1139 aa
MATRDVFCLVSYDFFARTGTAVEERKIFVYVVFATSSKYFYCGARALKIMNTNSKPFGNK
GPGGKSGPPPAKKIKGIDEKKPIYNEEFGEEPDEAFMFAEMESDELIGQGPEVKQTTAKW
ARPSAPELSEEKDRLVFQQLDIDYYTDKAMKGMPGAQSGTVATMRIFGVTRQQNSICCHV
HGFAPYLYVTVPTNFMPEQCRQFQEALNKALIADSRSKQEIHEFVLAVEFMERESMYGYH
ENKKCPFLKITLALPPFIAAAKRLLERGEIAAPFNSMAYVAYESNIDFEIRYMVDADIVG
CNWIELPPGSWRLRPHSTVKPMTRCQIEVDVAWNKVISHAPEGEWADVAPFRILSFDIEC
AGRKGIFPEADKDRVIQIANMVSLYGETEPFIRNIMTLDTCAPIIGSQVMSYKLEDELLD
KWADFVREVDPDIITGYNICNFDLPYLLNRAKHLKRGKFDFLGRIKDKKSAIKETMIQSK
QMGRRENKSINIEGRVQFDLLLVLLRDYKLRSYTLNSVSYHFLCEQKEDVHHSIITELQE
GNPQTRRRLAVYCLKDAHLPLRLLDKLMCLTNYMEMARVTGVPLSYLLTRGQQIKVVSQL
LRKAKEQGLLMPVHKAEAGEEFEGATVIEPIRGYYSQPIATLDFSSLYPSIMMAHNLCYT
SLLNPRDKDKLKEDQYIKTPAGNYFVKASVRKGLLPEILEALLAARKKAKKDLAVETDPL
RKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIEKTSTEVEAKFRV
ENGYAHDAKVIYGDTDSVMVKFGVSTVAEAMVLGREAAEFVSAKFIKPINLEFEKVYFPY
LLINKKRYAGLYWTKPEQFDKMDCKGIETVRRDNCQLVANLINTCLQKILMDRDPDGALE
YAKQTISDLLCNKVDISLLVITKELTKTDKDYANKQAHVELAHKMRKRDAGTAPKLGDRV
PYVIVAAAKNTPAYLKAEDPIYVLENSIPIDAQYYLENQLSKPLVRIFEPILGSKAESSL
LHGDHTRTRSVITSKVGGLAKFTSRKSTCIGCKTVLPNDSAVCKFCKPKESEFYQREIGQ
LYALEEKFNRLWTECQRCQGSLNEEVLCSNRDCPIFYMRKKVQKDLCEQEKLMKRFGQP
NT seq 3420 nt   +upstreamnt  +downstreamnt
atggcaactcgtgatgtgttctgcttagtatcttatgattttttcgcgcgcactggaaca
gctgtcgaagaaaggaaaattttcgtttatgttgtttttgcaactagttcgaaatatttt
tactgtggagctagagctttaaaaatcatgaataccaacagtaaaccttttggaaataaa
ggcccaggtggtaaaagtggtcctccaccagccaaaaaaattaaaggaatagatgaaaag
aaaccaatttataatgaagaatttggtgaagagcctgatgaggcatttatgtttgcagaa
atggagtcagatgaattgattggacagggacctgaagtcaagcagacaacagcaaaatgg
gcaagaccttcagctcctgaactgtctgaagaaaaggatcgcttggttttccaacagctg
gatatagactattacactgataaggccatgaaaggaatgccaggtgcccagtcaggaaca
gttgctacaatgagaatatttggagtgactcgtcaacaaaattcaatttgctgtcatgtt
catggttttgctccatacctctatgttactgtacctactaatttcatgcctgaacaatgt
cggcagtttcaggaagctctcaacaaggcattaattgcggatagcaggtccaaacaggaa
attcacgagtttgtactcgcggtggagttcatggaaagggagagcatgtatgggtaccac
gagaataagaaatgtcctttcctgaaaattacactcgcccttcctccttttatcgccgct
gcgaaacgactcttggaacgcggagagattgccgctccttttaactccatggcctatgtg
gcctatgaatccaacattgattttgaaatcaggtacatggttgatgcagatattgttggt
tgcaattggattgaactaccgccagggagctggcgtttaagacctcattctaccgtcaaa
ccgatgacaagatgccaaatcgaagtggacgtcgcatggaacaaagtgatttctcatgct
cccgaaggggaatgggcagatgttgcgcctttccgcattctgagctttgatattgaatgc
gccggtcgtaaaggtattttccctgaggcggacaaggacagagtaattcaaattgcaaac
atggtgtcgttatatggcgagacggaaccgtttattcggaacatcatgacactagataca
tgtgccccaattattggcagtcaagtgatgtcttataaattggaggacgaattgcttgat
aaatgggccgatttcgttcgggaagtcgatccagatattatcactggatataatatctgt
aattttgatctgccgtatttgctcaatcgcgcaaaacacttgaagcgtggcaaatttgat
ttccttggacgcattaaagacaaaaagtcggctattaaagaaacgatgattcagagtaag
caaatggggcgcagggaaaacaaaagcatcaacattgaaggccgtgtccagtttgatctt
cttctagtattgctacgtgattacaaacttcgttcctacactctcaattcggtcagctac
cactttttatgcgagcaaaaggaagacgtccatcattcaattatcacggaattgcaagaa
ggcaatccgcaaactcgtcgacgacttgcggtttactgccttaaagatgcccatctacca
cttcgcctgctagacaagctcatgtgcttgactaactacatggaaatggctcgtgtaaca
ggcgtacccctatcctacctattaactcgtggccaacagatcaaagttgtctcacagttg
ttaagaaaagccaaggaacagggcttattgatgcccgtccataaagcagaggcgggagag
gaatttgaaggtgcgacagttatcgaacctattcgaggttactacagtcaacccatcgct
acattggatttttcttcgctgtatccttccattatgatggcccacaacttgtgctatact
tccttgttgaatccgcgtgacaaggataagctgaaagaggaccaatatatcaaaacacct
gcaggcaactactttgtaaaggcctccgtgcggaaaggactcttaccggagattttggaa
gcactgttggcggccaggaaaaaagccaagaaggatttggctgtggagacagatcctctg
agaaagaaggttcttgacggtcgccagctcgccttaaagatttcagccaacagtgtttat
ggtttcactggcgctcaagtcggaaaattaccgtgtctagaaatttcgcaaagtgtaaca
gcgttcggccgaatgatgattgagaaaactagtacggaagtggaagccaagtttcgcgtt
gagaatggctatgctcatgatgccaaggtaatttacggtgacacagattctgtgatggtg
aagttcggtgtatctacggtagcagaagcgatggttttaggtcgggaagcagccgaattt
gtatcggctaagttcatcaagcccattaatttggaattcgaaaaagtttatttcccctat
ttattaatcaacaaaaagaggtacgcaggactgtactggaccaaacccgaacagtttgac
aagatggattgcaaaggtattgaaacagttcgacgagacaactgtcagctagtcgctaac
cttatcaacacctgtcttcagaaaatcctgatggatcgagatccagatggagccttggag
tacgcaaaacaaacaatttcggacttgctttgcaacaaggtcgacatttcactcctagta
attactaaggagctgaccaagacggataaggactacgctaacaaacaggcacacgtggaa
ttagctcacaaaatgcgtaaacgagacgctggtactgctccaaaattaggtgatcgagtc
ccttacgtcattgttgccgccgcgaaaaacactccagcctatctcaaagctgaagatcct
atttatgttctggaaaacagcatacccatagatgcacaatactatttagaaaatcaactt
tcgaaacctcttgtccgaattttcgaaccaatccttggatccaaagcggaatcttcgtta
ttacatggcgaccatacccgaacacgttcagttatcacctcaaaagtaggtgggctggcg
aagtttacttcccgcaaatcaacttgtattggatgtaagactgtccttccaaatgacagt
gccgtttgcaaattttgtaagccgaaagagtcggaattttatcagagagaaattggtcaa
ctttacgctcttgaagaaaaattcaaccgtctttggactgagtgccagcgttgtcaaggt
agccttaacgaggaggttctctgttcaaatcgggattgccccatcttttacatgcgcaag
aaagttcaaaaggacctttgtgaacaagaaaaacttatgaaaaggtttggccaaccttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (113)   
   KEGG ORTHOLOGY (1)   
   RefGene (109)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (129)   

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