KEGG   Danio rerio (zebrafish): 100002391
Entry
100002391         CDS       T01004                                 
Symbol
nphp1
Name
(RefSeq) nephrocystin-1
  KO
K19657  nephrocystin-1
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:dre03037]
    100002391 (nphp1)
Cilium and associated proteins [BR:dre03037]
 Primary cilia and associated proteins
  Nephronophthisis-related proteins
   100002391 (nphp1)
SSDB
Motif
Pfam: SH3_1 SH3_9 SH3_2 SH3_3 hSH3 SH3_10 DUF630 Allexi_40kDa
Other DBs
NCBI-GeneID: 100002391
NCBI-ProteinID: NP_001070638
ZFIN: ZDB-GENE-060929-1234
Ensembl: ENSDARG00000009046
UniProt: Q08CL9
Position
17:22072354..22091141
AA seq 667 aa
MPPKRRGPLQIVQRETDDIKRQVDALVQQAAKADVSENKEALQRCRELQRLVDDIMKRLK
KLSKADEPAPVGNYDQCKREEEKRLLTLHDHLQSLALQLLPHDETAGPSSSHTEQDSEEE
DSDEEDESSEEEDAKGDVHEEDDDADSADEDTDMAAAAEQGSASYITLSSFTAKEEGDLS
IQKGEILKVLSKNKDGWWLAQNSNGQKGLVPKTFLKMSSSLQDSERENEDEEDSEEEQES
SKTSNWNTVRKAVTEIDATDVLSAMGAIPPGFRPSTLSRLLEEGSSYRASHFIQPKLSQS
QLSFKDLHMDPDTGKVHGRPSRVSLTLTLWSCRMIPSPGVGLQVLSRHVRLCAFNGTQVL
SNIHTVRATYNSKNPKTWSFSPRMTGMLPCLLDGDCFLRCDSESSDLGILFELGVTYIRN
STGERGDLSCGWTFLKLFDESGAPIALRTQELTIHGGTPFEKDLDMDTMSTKKGYQTGVF
HQMLLSRKMPKLVVKLKSLNSSSRSRLNLLPDTIVGSLSTLHLLATYRQILADALLLDRV
TMCNADLICSSVLASFPNVLDQPDLMDAFRKSWSESESNLKRSEKRDINILKQMFVSVYM
GSVFPLLFSAEMPTPCWADEETESQRARIIYNPSQKTSIETLLSSQNSHQAFDITQVTYD
LISSARQ
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgcctccaaagagaagagggccccttcagattgtccaaagagaaacggatgacatcaag
cgacaggtggatgctttggtgcagcaagcggctaaagcagatgtgtcagaaaacaaagag
gccttgcagaggtgcagagaattacagcgcttagtggacgacattatgaagaggctgaag
aagttatctaaagcagatgaaccagctccagttggaaactatgaccagtgtaagagggaa
gaggagaagcggttattgactttacatgatcatctacagtctctagctcttcagctgctg
cctcatgatgagacggctggacctagttcttcacatacagaacaggacagcgaggaagag
gatagtgatgaagaagatgagagctctgaagaggaagatgctaaaggagacgtacacgag
gaagatgatgatgctgacagtgctgatgaagatacagatatggctgctgctgcagaacag
ggatctgcctcctatatcactctcagttcgtttacagcgaaggaggaaggggatctcagc
attcagaaaggagagattctaaaagttttgtcaaaaaataaagatggatggtggctagcg
caaaactcgaatggacagaaaggcctggtgcctaaaacttttctaaagatgtcatcctct
ctacaggacagtgagagagagaatgaagatgaagaggacagcgaggaagaacaggaatcc
agcaaaacatccaattggaacacagtacggaaggctgtaactgagattgatgctacagat
gtgctgtcggcgatgggtgctattcctccaggcttcagaccttcaacattatccagactt
ctggaggaagggtcatcttacagagcaagtcactttattcaacccaagcttagccagtct
caactgtcatttaaagatctccatatggatccagacacaggaaaggttcacggtcggcca
tctagagtcagtttaaccctgaccctgtggagctgtagaatgatcccatcacccggggtc
gggttacaggtgcttagcagacacgttcggctctgtgcatttaacggaactcaggttttg
agtaacatccacacagtcagagccacttacaactccaagaacccaaagacttggagcttt
tctccacggatgactgggatgctaccctgtctactggatggagattgttttctgcgttgc
gactctgaatcttccgatcttggaattctgtttgaattgggtgtaacctacataagaaac
tctactggggagagaggagacctcagctgtggctggactttccttaaactgtttgatgaa
agcggagcccccattgctctacggacacaagagctcactattcatggtggcacgccattt
gagaaagacttagatatggataccatgtctacaaaaaaagggtatcagactggtgtgttt
caccagatgttgctctccaggaagatgccaaaacttgttgtgaagctcaaatcgctaaac
tcaagcagcagatcgcgtctgaatctgctgcctgacactatcgtaggaagtctgtccaca
ttacatctcttggcgacatacaggcaaattctcgctgatgctcttttacttgacagagtg
accatgtgtaatgcagatctgatctgcagctcagttttagcctcctttcctaatgttcta
gatcagccagatctgatggatgcatttaggaaatcctggagcgaatcagagagtaacctg
aaaagatctgaaaagagggatataaacatactaaagcagatgtttgtgagtgtctacatg
ggcagcgtgtttccattgctgttttctgcagaaatgcccactccctgctgggcagatgag
gaaacggagtctcagcgcgcccgtatcatctacaacccttcccaaaaaacctcaatagaa
actctgctgtcctcccaaaactcacatcaagcctttgacatcacacaggtcacctatgac
ctcattagcagtgcccgccagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (51)   

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