KEGG   Danio rerio (zebrafish): 100333121
Entry
100333121         CDS       T01004                                 
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
  KO
K16498  protocadherin delta 1
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dre01009]
    100333121 (pcdh11)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:dre04515]
    100333121 (pcdh11)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100333121 (pcdh11)
Cell adhesion molecules [BR:dre04515]
 Cadherins
  Protocadherins
   100333121 (pcdh11)
SSDB
Motif
Pfam: Cadherin Protocadherin Cadherin_2 Cadherin_3 RibLong TMEM154 DUF6249 Prominin
Other DBs
NCBI-GeneID: 100333121
NCBI-ProteinID: XP_005173247
ZFIN: ZDB-GENE-140106-21
Ensembl: ENSDARG00000098652
UniProt: A0A8M2BKI4
Position
14:complement(27000008..27297703)
AA seq 1224 aa
MDLASEAHVLVVLFTCLFLMCRAQEKDYTVKEEQPENVRIGNLRKDLNLNLDPDIKLSSA
LQFKPVYKTGDVPLVKVEASTGEILTTANRIDREKLCSGVFNEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAFDPDIGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQSLDRETKDTFVMKIKVEDGGNPPKSSTAILQVTVS
DVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQIHFSFSNQISPSTKRHF
AIDSTTGLITVKQPLDREVNPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDRDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNVPVFPQPEIQLSIPENND
PGTQLIKISATDADSGSNALIIYSLGPDAPDGFNIDSRSGILSVVKRLDREKQEKYSFTV
IARDNGTTPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVKAVDAGLMQTTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVPSNTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSL
RGLFTIDKTTGNITLQEKIVAADQGLHRLVVKVKDLGQPESLHAIALVHLFVNDTVSNAT
FIQEQLRKSLETPLERNIGDNDVTPQTNGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKSKQSGEWVSPNQDGRQIKKKKKKKKRSPKSLLLNFVTIEETKSDDPTHEHVNG
TLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKHHV
IQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGQIHTRQNQTPDKAFPVV
PTMCPHKQTQRRVTFHLPDGSQESCSDSGLGEPEPNSAASITQPLPLGFPQDEYYEQTSP
NSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDSCWMPPALTQFQTSNATT
LPSFGFQQSWARGIKPDGRHTLGRSVPKDDLDKGSNRPQFYNTLERHCSKKEDPVKVIPL
ASFSATSSPQMSSSGGAFLHEHQL
NT seq 3675 nt   +upstreamnt  +downstreamnt
atggacttagcaagtgaggcccatgttctggtggttttattcacctgcttgttcttgatg
tgccgggctcaagaaaaggactacaccgtaaaagaggagcagccggagaatgtgcgcatc
ggaaacctgcgcaaagacctaaacttgaacctggatccagacattaaactgtcttctgcg
ctgcagtttaaacctgtctacaagacaggtgatgtgcctttagtcaaggtagaagccagc
acaggagaaattcttaccacagccaaccgaatcgaccgcgagaaactctgttctggagtc
ttcaacgagaagcgctgctattatgagattgaggttgctgtactacctgatgagattttc
cgactggtcaagatccgcttcctcatcgaagacatcaacgacaatgccccactctttcag
tcgacagttatcaacatctccattccagaaaacacagccatcaacagccgctacccagtc
ccttccgcatttgaccctgatataggaatcaatgggattcagcactatgagcttgtcaag
agtgtgagtgaatttggcttggacatcattgagacacctgagggagacaaatggccccaa
ctcatagtccagcagagccttgatcgagagacaaaggacacctttgtgatgaaaattaaa
gtagaagatggtggcaaccctccaaagtccagcacagccattcttcaagtgaccgtctca
gatgtgaatgacaatcggccggtgttcaaggacagcgaggtggaagtaaacgttccagag
aatgccccaatgggaacgtctgtcactcacctccatgctactgatgctgatctgggatcc
aatgctcaaattcacttctctttcagcaaccaaatatccccttccaccaaacgacatttt
gctattgacagcacaactggactgattaccgtcaagcagccactggacagggaagtcaac
ccagtgcacaagcttatagttctagccagtgatggaagctctacaccttcaagggctaca
gtgatagtcaacgtgacagacattaatgacaacgttccctctatagatacccgttatata
atgaatcttgtaaatggcactgtgctgttgtctgaaaatgccccactcaacacaaaaata
gccctaattactgtgacagacagagattcagatctgaacggtaaagtgacatgttacact
gatcatgatgtaccttttagattgaagccggtcttcaatgatcagtttttacttgaaact
gctgcacccttagattatgagaccactcgagagtatgcgattcggatagttgcatctgac
tctgggaaacctcctttaaacacttctgcaatggtgctgattaaaatcaaggatgaaaat
gacaatgttcctgttttcccccagcctgaaatccagctgtccatcccggaaaacaatgac
cctggcacacagttgataaaaatcagtgcaacagatgctgatagtggttctaatgctctt
attatttatagtcttggcccagatgctcctgatgggtttaacatagattctcgatctgga
attctttctgttgtcaaaaggctagatagagagaagcaggagaagtattcattcacagtc
attgcaagggataacggtacaactcctcttcaaagcaacgtcactgtaaagctgatagtc
caagaccaaaatgataacagtcctgcctttacccatcccgagtacaacttttatgtgcct
gagaaccttcctttgtatgggacagtgggtttgatcactgtcacagatgcggatgctggc
gacaatgcagtcgtcaccctctcgatcattaacgggaaggacaatttcatcattgacccc
aaaactggggtgatcaagccaaacattaccttcgacagggagcaacaaagctcctacaca
tttgttgtcaaggctgtggatgcaggtctaatgcaaaccacctcatatgcaaaggtcact
ataaatgttgttgacgtgaacgacaatcgaccagtgtttgtcatcccctcctcaaactac
tcctatgatctagtaccttcaaacaccagccctggatctgtggtgaccagagtgtttgct
atagataatgatactgggatgaatgctgagctccagtatagtattattggagggtcgctg
agaggactgtttaccattgacaaaacgacaggcaacattactttgcaggaaaagattgta
gcagcagaccaaggtctacataggctggtggtgaaggtcaaggacttggggcagccagag
tccttacatgcaattgcccttgtccatttgtttgtgaatgatacagtctctaatgccacg
ttcattcaggagcaactacgcaaaagtttagagactcctttagagcggaacattggggac
aatgatgtgacaccccagactaatggctatgtaattgtcgttattgccataattgctggg
actatgactgttatcctggtaatttttgtaactgctttggtacgctgtcgacagacaccg
agacacaaagttgttcagaagagcaagcaaagtggcgagtgggtttcacccaaccaggac
ggtcggcagattaaaaagaaaaagaagaagaagaagaggtctccaaaaagtttactgttg
aattttgttaccattgaggaaaccaagtctgatgaccctactcatgaacacgtgaatggc
accttagacctacctgttgaacttgaggagcagacaatgggaaagtacaactgggctacc
acaccaactaccttcaaacccgacagtcctgacttagccaagcactacaaatccgcttcc
cctcagccaacattccagatcaaaccagagacccctgtggctcccaagaagcatcatgtc
attcaggaactcccactggacaacacattcgtggtgggctgtgactcgctttccaaatgt
tcctccagcagctccgacccctacagcgtttcagagtgcagctgtcaagggggcttcaag
gcacctggacaaatccacaccagacagaaccagaccccggataaagcattccctgttgtc
ccaaccatgtgccctcacaagcagacacagcggcgcgtgaccttccacctgccggacggt
tctcaggagagctgcagtgacagtgggcttggagagccggagcccaacagcgctgccagc
atcacccagcctctgcccctaggcttccctcaggatgagtactatgaacagacctcaccc
aacagccgaaccgagggtgacggcaactctgaccccgagtccactattgaagtgaacctg
cagaaggctcttgccgaggcctcggagacctgtacccaggaatgtctgatcctgggtcat
tctgacagctgctggatgccgccagcgctgacccaattccaaacgtccaacgccaccact
ctgccctcctttggttttcagcaaagctgggcacgggggatcaagccagacgggcgtcac
acccttggcaggtcggtgcccaaagatgatctggacaaagggagcaaccggccccaattc
tacaacacacttgagagacactgcagcaagaaagaggatcctgtcaaggtcatccctcta
gccagcttttctgccacatccagcccccagatgtcctcgagcggaggagcctttctgcac
gagcatcagctgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (36)   

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