KEGG   Danio rerio (zebrafish): 30544
Entry
30544             CDS       T01004                                 
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
  KO
K04495  transcription factor SOX17 (SOX group F)
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04310  Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    30544 (sox17)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    30544 (sox17)
Transcription factors [BR:dre03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    30544 (sox17)
SSDB
Motif
Pfam: HMG_box HMG_box_2 Sox17_18_mid HTH_24 YABBY
Other DBs
NCBI-GeneID: 30544
NCBI-ProteinID: NP_571362
ZFIN: ZDB-GENE-991213-1
Ensembl: ENSDARG00000101717
UniProt: Q5PQZ5
Position
7:complement(58773148..58776152)
AA seq 413 aa
MSSPDAGYSSDDPSQTSSCSSVMMPGMGQCPWVDPLSPLSDSKSKHEKCSAAGPGRGKSE
PRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVDKRPFVEEAERLR
VKHMQDHPNYKYRPRRRKQVKRNKRLEPSFPLPGMCDAKMTLCTEGMSAGYSGAGLPQYC
ENHTLFESYSLPTPDPSPMDAGTTEFFAQLQDQSAFSYHHQQEHHFQEQTNILNDTHCHG
NTQTLKSRQSHSIAYSNINTNTNSNLHAPINAQLSSINLQQVFHENANPQISHHPGTHLN
IFNRSPSSSSHHAMTPAYLNCPSTLDTFYNSSSQMKELSHCVSSHTHKQQSIAEAQSQAS
TATHSSGQMVDEVEFEHCLSFGVPSAPLPGSDLISTVLSDASSAVYYCGYNNS
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgagcagtcccgatgcggggtactccagtgacgatccgagccaaaccagcagctgcagc
tcagtcatgatgcctggcatggggcaatgtccgtgggtggacccgctcagtccgctctca
gactccaaatctaaacacgagaaatgctctgcggcgggtcccgggcgcggaaagagcgag
ccgcgcatccgaaggccaatgaacgcgtttatggtgtgggcgaaagatgagcgcaagagg
cttgcgcagcaaaacccagacctgcacaatgcggagctgagtaaaatgcttggtaagtca
tggaaagctttaccaatggtggacaaacgtccattcgttgaggaggccgaacgtctacga
gtcaaacatatgcaagaccacccaaactacaaatatcgacccaggcgtcgcaaacaggtg
aaacgaaacaagcgattggagcccagctttccgcttcctgggatgtgtgatgccaaaatg
accctgtgcacggaaggtatgagtgctggttattcaggagcaggactgcctcagtactgc
gagaaccatacattgtttgagtcctacagcttgcctacacctgacccctctcctatggat
gccgggacaactgagttttttgcccagcttcaggatcagtcagcattcagctaccatcac
cagcaagaacaccactttcaggaacaaaccaacatcctcaatgacacacactgtcatggc
aacacacagacactcaaaagcagacagtctcacagcattgcttactccaacatcaacaca
aacaccaattctaacttgcacgctcccatcaatgcacaactcagttcaataaacctgcag
caggtatttcacgagaacgccaacccgcaaatcagtcatcatccgggtactcacctcaac
atttttaacagaagcccctcctcttcttctcatcatgctatgacccctgcgtacctgaac
tgcccatcaactttagacaccttttataattccagctctcaaatgaaagagttgtcacat
tgtgttagcagccacacacataaacagcaaagcattgctgaggcacaatcacaggcctct
acagcaacccacagttctggtcaaatggtggacgaggtggagtttgagcactgtctctct
tttggggtccccagtgcacctttgccggggtctgacttaatctccactgtactgtcagac
gctagcagtgctgtatactactgcggctataataattcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (46)   

Download RDF
DBGET integrated database retrieval system