KEGG   Danio rerio (zebrafish): 321855
Entry
321855            CDS       T01004                                 
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog
  KO
K16474  intraflagellar transport protein 88
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:dre03037]
    321855 (ift88)
Cilium and associated proteins [BR:dre03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex B1
   321855 (ift88)
SSDB
Motif
Pfam: TPR_2 TPR_1 TPR_12 TPR_8 TPR_19 TPR_14 TPR_6 TPR_16 TPR_7 TPR_11 ANAPC3 TPR_17 TPR_9 SNAP TPR_10 TPR-S TPR_MalT RPN7 DUF6584 TPR_15 SHPRH_helical-1st DUF2989 TPR_4 Evf Secretin_N_2 RNPP_C
Other DBs
NCBI-GeneID: 321855
NCBI-ProteinID: NP_001001725
ZFIN: ZDB-GENE-030131-574
Ensembl: ENSDARG00000027234
UniProt: Q6RUQ9
Position
9:complement(21365632..21383589)
AA seq 824 aa
MENVHLVPEEEEDDLYTGYNDYNPTFDSEDLHNDVAFQQAVRTSHGRRPPMTAKYPGTAI
GGRPIGTAYGSRVPIGTAMGRPMTGAVQDGAARPMTAVRAAGYSSSIARGSAFDPLGQAK
GPAPPLETKNEDTPEEKIKILEKKVNDLIEDSCLAHARGDLQVSLEKAKEAGRKERALVR
QREQTGTADHINLDLTYSVLFNLANQYANNDMYTEALNTCQVIVKNKMFNNAGRLKVNMA
NIYFKQKNYTKAIKFYRMALDQISNAHNAMRIKIMQNIGVVFIHMGQYSDAITSFEYIMT
ESPNIKTGFNLILCYYAIGDRERMKKAFQKLICVPLGVDDDDKYIPPNDDPHANMVIEAI
KNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGSQYVELANDLEI
NKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAMSA
DRYNPAALINKGNTLFVKEDYEKAAEFYKESLRNDSSCTEALYNLGLTYKRLGRLEEALD
CFLKLHAILRNSAQVMYQLANLYEMLEDPHQAIEWLMQLTSVTPTDAQVLAKLGDLYDNE
GDKSQAFQYYYESYRYFPSNISVIEWLGAYYIDTQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKEIHRKFPENVECLRFLVRLCTDMGLKEVQDYATKLKKVEKM
KEIREQRVRSGRDSSARSRREGSAGSDSGQSNHGTSAKGERLSVKLKTLPGSNEPYEAST
QQEIDASYVDPLGPQTQRPKTAARKRNEEDEFADEELGDDLLPE
NT seq 2475 nt   +upstreamnt  +downstreamnt
atggagaatgtgcatcttgtcccagaggaagaggaggatgatttgtatacaggctacaat
gattacaatcccacttttgactcagaggaccttcacaatgatgtggccttccagcaggct
gtcaggacaagtcatggcaggagacccccaatgacagcaaaatatcctggcactgctatt
ggagggcgaccgattggtacagcttatgggtctcgagtgcctattggcactgcaatgggg
cggccaatgactggagctgttcaggatggtgcagctcgtcccatgactgccgttcgggcc
gcaggatattcttcatcaatagctagaggctctgcgtttgatccactgggacaggcaaaa
ggaccggctcctccattagagacaaagaatgaagacactccagaggaaaagataaagatc
ctggaaaagaaggtgaatgatttgatagaggatagctgtcttgctcatgcacgtggagat
cttcaggtgtctctagagaaagccaaagaagcaggcaggaaggaaagagctttggtgaga
cagagagaacaaacaggcactgcagaccacatcaatctggatctgacatactctgtgctg
tttaatttagcaaatcagtatgccaacaatgacatgtacaccgaggccttgaacacttgc
caagtcattgtgaagaacaaaatgttcaataatgcagggcgattaaaagtgaacatggca
aatatatatttcaagcaaaagaactatacaaaggctattaaattttatcgcatggctttg
gatcagatttcaaatgcccacaatgcaatgaggataaagatcatgcagaacattggagtt
gtgttcatacacatgggccagtactcagacgccatcacatcctttgagtacatcatgact
gagagccctaacataaagacaggtttcaacctcatcctgtgctactatgccattggagac
cgtgagaggatgaagaaagcttttcaaaaactcatttgtgtgccccttggagttgatgat
gatgacaaatatatccctcctaatgacgaccctcatgcaaacatggtgattgaagctata
aagaatgataagcttcaccaaatggaaagagagaggaaagcacttgctgaaaaatatatt
atgacctcagccaaactcattgctccagcaatcgagatgtcatttgcagctgggtttgac
tggtgtgtggacatggtgaagggttcccaatacgtggagcttgcaaatgacttggagatc
aataaagccattacctacctaagacagagagacttcaaacaggcagttgagacgctaaag
atgtttgagaagaaggacagtcgagtaaaaagtgcagctgccactaatctttcttttctt
tactttttggaaaaagattttgaccaggctgaccgctatgcagagctggccatgagcgct
gaccgctacaaccccgcagccctcattaacaaaggcaacacgttgtttgtgaaggaggac
tatgagaaagcagcagagttttacaaggagtctcttcgtaatgactcatcctgcactgaa
gcactctacaacttaggtttgacgtataagaggctgggtagactggaggaagctctggat
tgttttctcaaactgcatgccatcctcagaaacagtgctcaggtcatgtaccagctggct
aatctatatgagatgttggaggaccctcatcaggccattgagtggctaatgcagcttacc
agtgtgacccctacagatgcacaggtgctggccaaactcggagacctctatgacaatgaa
ggagacaaatctcaggcctttcagtattattatgagtcgtacaggtattttccctcaaac
attagtgtcattgagtggttgggtgcatattacatcgacacccagttctgtgagaaagca
attcagtactttgagagagctaccctaattcagccaacacaggtgaagtggcagcttatg
gtggccagctgttacaggagaagtgggaattatcagaaggcacttgagacctacaaggag
atccatcgcaagtttcctgaaaatgttgaatgtttgcgattcctggtccggctttgcaca
gatatgggactaaaagaggtgcaggattacgccaccaaactcaagaaagttgaaaaaatg
aaggagatcagagagcagagggtgaggtctggaagggatagcagtgctcgaagccgcagg
gaaggtagcgctggcagtgacagtggacagagcaaccacggcaccagcgccaagggtgag
aggcttagcgttaaactgaaaactcttccaggatccaatgagccgtatgaagccagtact
caacaggaaatagatgcttcttatgtcgatccattggggcctcaaacacagaggccaaaa
actgcagcaaggaaacgcaatgaggaggatgagtttgctgatgaagagctgggagatgat
ttactgcctgagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (17)   
   RefSeq(nuc) (9)   
   GenBank (4)   
   EMBL (4)   
Protein domain (26)   
   Pfam (26)   
All databases (71)   

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