KEGG   Danio rerio (zebrafish): 323465
Entry
323465            CDS       T01004                                 
Symbol
vcanb
Name
(RefSeq) versican b precursor
  KO
K06794  neurocan core protein
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:dre00535]
    323465 (vcanb)
   00536 Glycosaminoglycan binding proteins [BR:dre00536]
    323465 (vcanb)
   04091 Lectins [BR:dre04091]
    323465 (vcanb)
Proteoglycans [BR:dre00535]
 Extracellular matrix (ECM) proteoglycans
  Aggrecan / versican family
   323465 (vcanb)
Glycosaminoglycan binding proteins [BR:dre00536]
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   323465 (vcanb)
Lectins [BR:dre04091]
 C-Type lectins
  Group 1: Proteoglycan core proteins
   323465 (vcanb)
SSDB
Motif
Pfam: Xlink Lectin_C V-set hEGF Sushi EGF I-set Ig_3 EGF_CA ig Izumo-Ig EGF_3 EGF_2
Other DBs
NCBI-GeneID: 323465
NCBI-ProteinID: NP_999853
ZFIN: ZDB-GENE-030131-2185
Ensembl: ENSDARG00000009401
UniProt: Q75ZI3
Position
10:43188678..43262960
AA seq 1570 aa
MMLLDVKHILWLICVCSAYSQDDSVRRMRVVRSSSRVHGALAQSVVLPCRFLVLPPLPGS
SVITHSDHLRIKWTKLQSHGEAVAVVAQNGIVKMGQEYMGRVSVPSRPEDQGDASLTISR
LRASDAGVYRCEVMHGIEDTQDSITLDVSGVVFHYRANTSRYSLNFTQAQQACADVDSSI
ATPEQLYSAYEDGFEQCDAGWMADQTVRYPIIRPRDGCHGDKWMKPGVKSYDVRNAYEKY
DVYCYVGKLQGEVFFIDQKLSLDEARSACVGQDSVLASPGHLHAAWRDGMDQCDFGWLSD
GSARYPVSVPRLQCGRGQLGVRTMYRNADRTGYPLPTMKLGAYCFRGRDPTTAPTAGPTT
PTVPSDVLKISSLEVMSSAPTDDTIEEPPSMFSASMAPRDKPTPEAYPTIVTTQTGGILD
TPSPTFGDYDDNSNLMVQGAPDLSLQGTVGSTTMVTPSYYDSIFSIKLPPQPTKGVKNPL
DTPHGEYSSAEGSISGDTETPESVIPTSPVLVTTLQVDPDQPKVVYKEDGSTENITEGVV
FAESSMGTPGLGEVIVHGSQSEVSKNVSFPIDISLLIVDIKDTNQSVESVLDFLGEPRGI
TDVLTSSENEPPLGSGDLEIYPSASVTVTPEVSFINGKHELTLQPVAEQEARGDQFDTVT
PPIEEIIPDDEIVILMSEFEGVVSSPKTDESGLTTRSPVEPHFTTKISKPDLGSGDLEIY
SSASVTITPEVSFINGKHELTLKPDVEHEARGDQFDTATPPMEEIIPDDEIVIVLAEAEG
LTSSYKTDESGLTTRSPVEPYFTTKISESTTMSELPIFSTKSPSQEITPQAISFSTSINE
ESSGMRPTDDEEELTTLEGSADDLQSATASTDPDMVATDETEIGGTEKPTQAYGVHCSTQ
GPITTPETSQTTASSPVEKEIKPERDDFEGSTSAEEESSGQDMYSREEPKQPILSPTLSV
PSHSFTTSSTSTHPKDPREPASLLLPSAEPAVNVVSTLQTRVIPEEKDQSRSTTKSPLLV
PEFEKDVSTVFAISGDSGSGDHPTEALTKQPFIVTTLPSLFIQQTVETSVDANEPTKAFE
GSAEDTTPLSFTTARTETKFTTQRSDARILPTNSLRAIMSSSQETVLIQKTHSEETTTLV
VPSETTEETMLPSKFGFSTEEPLISTSVHSSGPITIADTNLSISESVQDITSTTSTTEDM
IPTPKATSTSSFEETVVDYEDVQGASVVERQPPIREEFTTKKPEVWTDSSYTVESHVVDL
QDHALCSVSVCENGGTCFSSRKGNVCVCMPGFSGERCENDVDECQSNPCRNGATCIDGIN
SFKCVCLPSYSGSLCEQDTEVCDFGWQKFQSHCYKYFTHRRTWEAAERECRLQGGHLTSV
LSHEEQLFVNRLGHDYQWIGLNDKMFDNDFRWTDGHPMQFENWRDGQPDSFFSTGEDCVV
MIWHESGQWNDVPCNYHLTFTCKKGTVSCGQPPLIKDAQVYGSMKPRYEINSLVRYHCKE
GFIQRHVPTIRCREDGQWDKPKITCLNPSTFQKMYAHKYQNNNYYNSSKRRFSESQYRHR
WSKTAEELKH
NT seq 4713 nt   +upstreamnt  +downstreamnt
atgatgttgttggacgtgaagcacatcctctggctgatctgtgtctgcagcgcctactcg
caggatgactctgttcgccggatgcgggtggttcggagctcttcccgggtccacggcgct
ctagcgcagtctgttgttttaccgtgtcgttttctggtgctgccgccactacctggctcc
tccgtcataactcactctgatcacctgcgcatcaagtggaccaaactccagagccatggg
gaagccgtcgctgtggtggcccagaacggcatcgtcaaaatgggccaagagtatatgggc
cgggtgtcagtgcccagccgaccggaagaccaaggggacgcttctctgaccatctccaga
ctcagggccagtgacgccggggtgtatcgctgcgaggtcatgcacggcattgaggacact
caggactccattactctggatgtcagtggtgttgtgtttcattaccgggcgaacaccagc
cgctacagtctgaacttcacacaagctcagcaggcgtgtgcagatgtggactccagcatc
gccacccctgaacagctttattcagcatacgaggacggattcgagcagtgtgacgccgga
tggatggccgaccaaaccgtcagatatcccatcatcaggccacgtgacggttgtcatggt
gataagtggatgaagccgggggtcaaatcatacgatgtcaggaacgcctatgagaagtat
gacgtttactgctatgtgggaaaactacaaggtgaggtgttcttcattgatcagaaactg
tctctggacgaggcccgctcggcgtgtgtgggtcaggactcagtgttggcgtctcctggt
catcttcatgccgcctggagagacggcatggaccaatgcgatttcggctggttgtcggac
ggcagcgctcgatacccggtctccgttcccagactgcagtgcggccgaggacaactgggc
gtcaggaccatgtaccgcaacgccgaccggacgggctaccctttacccacaatgaaacta
ggagcctactgtttcagaggacgggatcctacaactgcacccacagctggacccacaaca
cctacagttccctcggacgtccttaagatttcctccctggaagtaatgtcttctgcgcca
accgatgacaccatagaagaaccaccttcaatgttctctgcaagcatggcaccacgtgac
aaacccactcctgaagcatatcccacaattgttacaactcaaactggggggattttggat
acaccttccccaacatttggtgactatgatgataatagtaacttaatggtgcaaggggca
cctgacctttcactccagggtaccgtgggctccaccacaatggtaaccccatcttattac
gactctattttctctatcaaacttcctcctcaacccacaaaaggggtcaagaatcctttg
gatacacctcatggggaatacagtagtgctgagggaagcatcagcggagacacggagact
ccggagagtgtgattcctacttcacctgtgcttgtcacaactctccaagtagacccagac
caaccaaaagtggtgtacaaagaggacggaagcacagaaaacatcactgaaggagtggtc
tttgctgagtccagtatgggaaccccaggcttaggtgaagtgattgtgcatgggtcacag
tctgaagtctccaagaatgtcagctttccgatagacatcagcttgctcatagtcgacatc
aaggatacaaatcaatcagttgaaagtgttctggattttcttggagaaccacggggcatc
actgatgttctaacatctagtgaaaatgagccacctttgggcagtggagaccttgaaata
tatccttcagcttctgttaccgtcaccccagaagtgagtttcattaacgggaagcacgag
ttgactctgcaaccagtcgccgaacaggaggctagaggagaccagttcgacactgtgacc
ccgccaattgaagaaatcatccctgacgatgagatagtaattcttatgtcagaatttgaa
ggtgttgtatcttcccctaaaacagatgaatctggcttgactacgagaagtccagttgag
ccccatttcacaacaaaaatctcaaagccagacttgggcagtggagatcttgaaatatat
tcttcagcttctgttaccatcaccccagaagtgagtttcattaatggaaagcatgagttg
accctgaaaccagacgttgaacatgaggctagaggagatcagttcgacactgcgacccct
ccaatggaagaaattattcctgatgatgagatagtaatagttctggccgaagctgaaggt
cttacatcttcctacaaaactgatgaatctggcttgactacaagaagcccagttgagccc
tatttcacaacaaagatctcagaaagtacaaccatgagtgaattgcccatattttcaacc
aaatctccaagccaggagataaccccacaagccatatcatttagcacatcaatcaatgaa
gaaagttcagggatgcgcccaacagatgatgaagaggagctgactacattggaaggctct
gcggatgacctgcagtcagctacagcttctactgacccagatatggtggctaccgacgag
actgaaataggtggaacagagaagcctacacaggcatatggggtgcattgctccacccaa
ggaccaattacaactccagaaacatctcaaactacagcatccagccctgtagaaaaagaa
ataaagccggaaagagatgattttgagggttccacctcagcagaagaagagagctctgga
caagatatgtattctcgagaggaaccaaaacaaccgattttatctccaaccctctctgtt
ccttctcactcctttacaacttcctcaacaagtactcatcccaaagacccaagggaacct
gctagtttactcttgcctagtgcagagcctgcagtaaatgtggtttcaactttacaaaca
agagtaatcccagaggagaaagaccaaagcaggagtaccactaagagtcctttattggtt
cctgagtttgaaaaagatgtaagcacagtcttcgccatctctggggacagtggctctggt
gatcatccaacagaagcattaacaaaacaacctttcattgtgactacccttccttctctt
ttcattcaacaaactgttgaaactagtgttgatgcaaatgaaccaactaaagcatttgaa
ggttctgctgaagacacaacaccattgtctttcaccactgcccgaactgaaactaaattc
acaacacaaagatcagatgctagaattctgcccacgaatagtctaagagcaattatgtct
tcctcccaagaaactgttctaatccaaaaaacacattcggaagagacaaccactttagtg
gtgccatcagagactacagaagagacaatgttaccttccaaatttggattctcaacagag
gagcctctcatctcaacgtctgtacattccagtggccccatcactattgctgatacaaat
ttaagcatttcagagtcagttcaggatattacaagtactacttctacaacagaagacatg
atccccacccctaaagccacaagtacttcgtcatttgaagagactgttgtagattatgaa
gatgtgcagggtgcctcagttgttgaaagacaaccaccaatcagggaagagttcaccaca
aaaaagccagaggtctggaccgattccagctacactgtggagagccatgtggtggatttg
caagatcacgcactttgctcggtcagtgtgtgtgaaaacggcggaacatgcttctccagc
agaaaaggaaatgtttgtgtctgcatgcctggatttagtggggaacgctgtgaaaatgat
gtcgatgaatgccagtcgaatccttgccgcaatggtgcaacatgcattgatggaataaac
tctttcaaatgtgtctgcctacccagctattcaggatccctctgtgaacaagatacggag
gtgtgcgactttggttggcagaagtttcagagccactgctataagtacttcacccaccgg
cggacgtgggaggcagcagaaagagagtgtcgtctgcagggcggacacctgaccagcgtc
ctgtcccacgaggagcagctcttcgtaaatcgtttgggtcatgactatcagtggatcggc
ctgaatgataaaatgtttgacaatgatttccgctggactgatggacatcctatgcaattc
gagaactggcgtgatggtcagccggacagcttcttctccaccggtgaggactgtgtggtc
atgatctggcatgagagcggacagtggaacgatgtgccctgcaactaccacctgaccttc
acctgtaagaagggcacagtgtcctgcggtcagcctcctctcataaaggacgctcaagtc
tatggcagcatgaagccgcgatacgagatcaactctctggttcgatatcactgtaaagaa
ggcttcatccagagacatgtccctactatcagatgcagagaagacggacagtgggacaag
cccaaaatcacatgcttgaatccgtccaccttccagaagatgtatgcacacaaataccaa
aacaacaactattacaacagcagtaagagacgcttcagtgaatctcagtaccgccatcgc
tggtcaaaaacagcagaagaactcaaacactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (76)   

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