KEGG   Danio rerio (zebrafish): 324554
Entry
324554            CDS       T01004                                 
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    324554 (cpsf3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    324554 (cpsf3)
   03019 Messenger RNA biogenesis [BR:dre03019]
    324554 (cpsf3)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     324554 (cpsf3)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     324554 (cpsf3)
    U7-dependent histone pre-mRNA processing factors
     324554 (cpsf3)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Lactamase_B_2 Lactamase_B_3 Beta_lactamase3 DUF1611
Other DBs
NCBI-GeneID: 324554
NCBI-ProteinID: NP_001003836
ZFIN: ZDB-GENE-030131-3275
Ensembl: ENSDARG00000027649
UniProt: Q6DRG6
Position
20:complement(29619894..29633452)
AA seq 690 aa
MATKRKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCSQGQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHL
TGDVEEIEMSEKSTVKVFNSITVIHENNLVVLEWFANPLNDMYADAVTTVVLEVQSNPKA
QKALQPQEKKVDVNVFQNRLLKMFQDMFGEECVDFKDKNCLAVNVDEKTAFIDLETRTVE
YEEPNPEDDSLREMLELAVQRLYEAINPVL
NT seq 2073 nt   +upstreamnt  +downstreamnt
atggctaccaaacgtaaagccgatgtaccagtgcctgcggaagagagtgatcagctcctc
atcagaccgctaggagctgggcaggaggttggcaggtcctgtatcatcctggagttcaaa
ggccgcaaaatcatggtggactgtggcatccaccctggactggagggcatggatgcattg
ccttacattgatttaatagacccagctgagattgacctgctgctcatcagccattttcac
ttggatcattgtggagctttaccatggtttttacagaagacaagtttcaaagggaggaca
ttcatgacccatgccaccaaagccatctaccgctggttactttcagactatgtcaaagtc
agcaatatttcagctgacgacatgctgtacaccgagactgatctagaagaaagcatggac
aagatagaaaccatcaacttccatgaagtgaaagaggtggccggcatcaagttttggtgt
tatcatgcagggcatgttttgggagcagccatgttcatgattgagattgcaggagtgaag
ctgctgtacaccggtgatttctcacgccaagaagaccgacatctcatggctgctgagatt
cccagcgtcaaaccagacattctcattactgagtccacatatggtacacacatccatgag
aagcgagaggagagagaggctcgtttctgtaacacagtccatgacatagtgaaccgtgag
ggccgctgtctcatccccgtgtttgctttgggccgagcccaggagctgcttctcattcta
gatgaatactggcagaatcatcctgagctccatgacattcctatttactatgcttcgtct
ctggctaagaagtgcatggctgtgtatcagacctatgtgaatgcaatgaatgacaagatc
cgcaaggccatcaatattaataacccttttgtctttaagcatatcagcaatctcaagagc
atggaccatttcgatgacatcggcccaagtgtagtgatggcatctccaggtatgatgcag
agtggcctctccagagagctgtttgagagctggtgcacagacaagaggaacggcgtcatc
atagcgggttactgtgtggaaggaacactcgcaaagcatatcatgtctgagcctgaggag
atcaccaccatgtctggacagaagcttccgctgaagatgtcagtggattacatctcattc
tctgctcatacagactaccagcagaccagcgagttcatccgagctctgaaacctcctcat
gtgattttggttcatggagagcagaatgaaatggctcggttgaaggctgcgctgatccga
gagtatgaggacaatgatgaggttcacattgaggtgcacaatcctcgaaacacagaggct
gtcacactcaacttcagaggagagaaactggccaaggtgatgggctctcttgcggataag
aagtgttcacagggtcagagagtctccgggatcctggtgaaaaagaacttcagttaccac
atcctctctccttctgacctctctaattacactgatcttgccatgagcacggtgaaacag
actcaagccattcccttcactggcccttttcccttgctgttgagtcagttacgtcacctg
acaggtgatgtagaggagattgagatgtcagagaagagcacagtgaaagtctttaacagc
atcacagtgattcatgagaacaacttggtggttttggagtggtttgccaatcctctgaat
gacatgtacgccgatgccgtcaccacagtggttctggaagtgcagtcaaaccccaaagct
cagaaagctcttcagccccaagaaaagaaagtggatgtaaatgtttttcagaatagacta
ctgaaaatgttccaagacatgtttggagaggagtgtgtcgactttaaagacaagaactgt
ctcgccgtgaatgtagatgagaagacggccttcattgacctggaaacaagaacggtggag
tatgaagagcccaatcctgaagatgattctctcagagaaatgctggagctcgccgtacag
aggctgtatgaagccataaacccagtgttgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (9)   
   Pfam (9)   
All databases (44)   

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