KEGG   Danio rerio (zebrafish): 326092
Entry
326092            CDS       T01004                                 
Symbol
scaf8
Name
(RefSeq) protein SCAF8 isoform X1
  KO
K13191  RNA-binding protein 16
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    326092 (scaf8)
   03041 Spliceosome [BR:dre03041]
    326092 (scaf8)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     326092 (scaf8)
Spliceosome [BR:dre03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    326092 (scaf8)
SSDB
Motif
Pfam: CID RRM_1 Transformer RRM_occluded
Other DBs
NCBI-GeneID: 326092
NCBI-ProteinID: XP_002665299
ZFIN: ZDB-GENE-030131-3703
Ensembl: ENSDARG00000100056
UniProt: A0A8M1RE49
Position
17:48965244..49020287
AA seq 1286 aa
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIIGTFQNLYRCPTDDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMAAGLPPPSVTPVSASSVIPMNSTTPGTPATPATPANIVQSLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANKLNPLEQRVSSFNKKLLGQFDFGNESEHSEDSKKDSASSQIPVLSDSINSSIF
HQLAEHLQQQNLEQFQKQLMEHQQHQQKSMSMESQDAIFGTENSAPSGQSSAPSQHQVQE
SKMDDSMDNQQQDMDIDEGQDVVDEELFETDEKKTSSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKDRQKKGLPPIRSRVLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSYKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNNDWE
SQRNTETAKETPSQPVKAEASTASSTASEAFTQPVTMMPMQIPVPQTVPAVGLVPPSFPV
TMAMPPPGFGPPPPFLRAGFNASQPPPGFMATPGVGPSAVGAVTSLASAQNSLVQPAMPN
TQDSSKDSPFGAMMPPTGTIPGSFIPSAMPGAQVFNPVGAQHQQSSTDKTPQSADAMEAS
SEITLQGMQNAVRSGMGLLGMHPSASLTHPLAGQRMTGLLPLELRPNLLQGPGGRFPLLM
QPGLAHQTNNVLDASLQAQARLRAPFSQMEQFNRTEGTFMRAPNPPPAVNDSLIKPNNEA
PPRSDVVTQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPGPARPPLLERPPRAVMQAES
REGRRENVSAGFRAESRWGPPRGDFDERDMRGMSGGSAKGFQEERPNNNFQNRFEGRSGG
SSGPTWNRGTGPSFNANMNQDYDDRRRPWERQKDRDDRDMDFRGEMNGNRHSRERDRDRE
RERDRNRERERGRDRNRERDRERENEKDKERERWTPLSSQSQPLLPQAKPQPLLPLPTPL
LPRPPAQEPVQTNSQSSPVLHPDPQPQSTEPAAEPQAEVKPEPQSLSPPEETTSSQEDTA
ASCVNGMETDSKPQSEPASQTATEPSSSPYPSLTSTPACFENEPPNGENPPEMSVSASVD
ADAEQTGPKVNAETEPELEKSDTEET
NT seq 3861 nt   +upstreamnt  +downstreamnt
atggaggccgtcaaggcgtttaacggcgagttgtactcattgaatgaatacaagccacct
atctccaaagccaagatgacccagattacaaagtcagcaattaaagctataaagttctac
aaacatgttgtccaaagtgtggagaaattcattcaaaagtgcaaacccgagtacaaagtt
cctggtctgtatgtcatcgactccattgtacggcagtcccgtcaccagtttggtcaagag
aaagatgttttcgctccacgcttcagtaagaacatcattggcacgttccaaaatctctac
cgctgcccgacagacgacaagagcaagattgtcagagtgctcaacttatggcagaaaaac
aacgtcttcaagagcgacatcattcagcctctactggatatggcagcaggtcttccaccg
cccagcgttacgcccgtctctgccagtagtgtcatacccatgaacagcactactcctgga
actcctgcaactccagccacccctgccaatatagtgcagagtcttccagactgggcgtct
cagatctccaacacagacactgtggctgcagttgcccagatcttgcagagtcctcagggc
cagcagttgcagcagctggttcagagcctgcagatgcagcagcagaagcctcagccctct
ctgctgcaggcgctggatgctggtttggtggtgcagcttcaggctttgactgcacaactc
actgcagctgcaacagccaacaaactcaacccactggaacagagagtttcctccttcaac
aagaagctgctgggtcagtttgatttcgggaatgagtctgaacacagcgaggattcgaag
aaagattctgcgtcctctcagatacctgtgctgtcagattccatcaacagctcaatattt
catcagctggcggagcatcttcagcagcaaaacctcgagcagtttcagaaacagctaatg
gagcaccaacagcatcaacagaagtctatgagcatggagagccaggacgctatttttggc
actgaaaattctgccccatctggccagagcagcgccccgtcacagcaccaagttcaagaa
tcaaaaatggatgattccatggacaaccaacaacaggacatggatattgatgagggacag
gatgtggtcgatgaggagctctttgagacggatgagaagaaaaccagcagcacccgttca
aggacgcgctcaagatcccgctctaggtcacctaagaggaggaggtcaagatcacgctct
gggtctcggaagcggaaacacagaaaacgctcaaggtctcggtcaagggaccgaaagagg
aagtcctcccgttcttattccagtgagcgaagagcacgggagagagaaaaagaccggcag
aaaaaagggcttcctccaatccgctcgagggttctcagtgtttgcagcactactctatgg
gttggtcaagtggacaagaaagccacccaacaggatctcacaaacctcttcgaagagttt
ggccagattgaatctatcaatatgattcctcccagaggctgcgcttacatctgtatggtc
catcgtcaggacgcatatcgggctcttcaaaagctgagcaccggctcttacaaaattggt
tcaaaggtcatcaagattgcttgggctctgaataaaggagtcaaacaggagtacaagcag
ttctgggatgtggacctcggggtcacttatatcccgtgggagaaggtgaaactggatgac
ctggatgactttgctgagggaggcatgattgaccaggagacggtcaacaacgattgggaa
tcacaaaggaatacggagacagccaaagagactccgagtcagccagttaaagctgaagca
agtacagccagcagcacagccagtgaggccttcacacagccggtcactatgatgcccatg
cagattccagtgccacagacagtccctgctgttggcctcgttcctccatccttccctgtc
accatggcaatgcccccaccaggcttcggtccccctccaccttttctaagggcagggttt
aatgcctcccagcctcccccaggtttcatggccacaccaggagtagggccgtcagcagtg
ggggcagtcaccagtctcgcttcagctcagaactctttagtacagcctgcgatgccaaac
actcaagacagcagcaaggattctccgtttggtgccatgatgcctcccaccggtactatt
cctgggagctttattccatcagcaatgcctggggcacaagtctttaaccctgtcggagca
cagcatcagcagagcagcacagacaaaacacctcagtctgcagacgctatggaggcatct
tctgaaataacactacagggaatgcagaacgcagtgcgcagtggaatgggtctgctgggt
atgcatccttctgcatctctgacgcatcctctcgccgggcagaggatgacagggctgctt
ccattggaacttcgtccaaacctgctccaggggcctggcggccgcttccccctacttatg
cagccaggccttgctcatcagaccaacaacgtcctggatgcttcacttcaagcccaagcc
cgtctccgggctccgttttctcaaatggagcagttcaatcgtacggagggtacttttatg
agggcacccaatcccccacctgctgtaaatgacagtctgatcaagcctaataatgaggcg
ccacccaggtctgatgtagtcacccaacaagagggagatcaggattatcgctttccacca
ccagagaagcaaagtacggggttgctgaagactcctccgctggagatgcgaacagagcct
ggacccgccagaccacctctgctagaaagacctccgagggcagtcatgcaagccgagagt
cgagagggtaggagagaaaatgtgtctgctggtttcagagcagaaagtcgttggggtcca
cccaggggggactttgatgagcgagacatgagggggatgtctggtggttcagcgaagggt
ttccaggaagagcggccaaataataactttcagaatcgatttgagggccgcagcggaggt
tcatcaggacccacttggaatcgtggaactggaccttcttttaacgccaacatgaaccaa
gattacgatgatcgccgcagaccttgggaaaggcagaaggacagggatgacagggatatg
gactttaggggtgaaatgaatggcaatcgtcatagccgggagcgcgacagagaccgtgaa
agggagagggaccggaatcgggagcgcgaacgtggcagagatcggaatcgtgagcgggac
agggaaagggagaacgagaaggataaagagcgggaacgttggactcctctttcttcacag
tctcaaccgctgcttcctcaagccaagcctcaaccgctacttcctttaccgacccccttg
cttcctcggcctccagcacaagaaccagtgcaaacgaactcgcagtcttcaccggtcctc
caccctgatcctcaaccccaatcaacagaaccagctgcggaaccacaagccgaggtcaag
ccagagccgcagtctctcagcccacctgaagagacgacaagtagtcaagaggacactgct
gcttcatgcgtcaacggaatggagactgattccaaacctcagtcggaacctgcatcccag
actgctacagagccctctagtagcccctatccatctctgacctccactcccgcctgcttc
gagaacgagcccccgaacggagagaaccccccagaaatgtctgtttccgcatctgtggac
gcagacgctgaacagactgggccaaaggtgaacgctgagactgaacctgagcttgagaaa
agtgacactgaggaaacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (11)   
   RefSeq(nuc) (3)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (81)   

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