KEGG   Danio rerio (zebrafish): 327322
Entry
327322            CDS       T01004                                 
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03420  Nucleotide excision repair
dre03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    327322 (ercc4)
   03460 Fanconi anemia pathway
    327322 (ercc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dre03032]
    327322 (ercc4)
   03400 DNA repair and recombination proteins [BR:dre03400]
    327322 (ercc4)
DNA replication proteins [BR:dre03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    327322 (ercc4)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     327322 (ercc4)
SSDB
Motif
Pfam: ERCC4 AmiA-like HHH_5
Other DBs
NCBI-GeneID: 327322
NCBI-ProteinID: NP_956079
ZFIN: ZDB-GENE-030131-5533
Ensembl: ENSDARG00000014161
UniProt: Q7SYE8
Position
12:19959037..19974532
AA seq 886 aa
MASALLEYETEMFLSVFSTDGLLITGEGLGIDRLLLHFMKVYSEEGSLVLLLNTSTPEQE
YLTERLRAEGVTHLPQTVTSDVQSADRYNVYTKGGVLFVTSRILVVDFLTDRIPAHLVTG
ILVYRAHNIIESCQEAFILRLYRQKNKTGFIKAFTDKATSFSSGFCKVERVMRNLFVKKL
FLWPRFQASVNATLDKHKPDVVELHVTLTPAMRAIQSSILDIMNACLKELKRYNPTLEAE
DLSLENSLGTAFEKTIRHYLDPLWHQLGSRTKSLVQDLKILRTLLLYLTQYDCVTFLNLL
ESLRTSQKSFGSNSGWLFLDSSMSMFVNARSRVYRIQESKKKLKVGETEQKQNLAPPKRE
LVLEKNPKWEALTEVLQEIEKENSKSEHEPGRVLICASDDRTCAQLKEYIQKGPEHLLNR
LYSRTIGKEDPQPDLLKLDKGWQKKDSARSKGKNSRQKRTKANSKKPAKMEKLSRVSQDD
SADKDLNENSEDEGGLIEEEEEEEIVLDLSSDDYYGILKEPLTVIHPLKGCSDPYSLTRV
LHEVDPMFVVLYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQRYLTALNKEKQA
FEHLIREKASMVVPEEREGREDTNLDLVRSQEPASAATNTRKAGGLEEVKEPHRIIVDMR
EFRSELPSLLHRRGLDIEPVTLEVGDYILTSDICVERKSVSDLIGSLQSGRLYTQCLSMT
RFYRRPVLLIEFDPAKPFSLVARSDFRQEISANDVTSKLTLLTLHFPRLRLLWCPSPYVT
AELFQELKHGRTEPDASTAQAVTAESETVTESADLYNPGPYDFLLRMPGVNVKNVKSLIK
HVSCLADLVTFSQETLSEILGSSSNARMLYEFIHNPMDVRPIQKNK
NT seq 2661 nt   +upstreamnt  +downstreamnt
atggcgagtgctctgttggagtatgagacggagatgtttctgagtgtgttcagcacagac
gggctgttgatcacgggtgaaggactcggcattgaccgccttctgctgcacttcatgaag
gtgtattctgaggagggcagcttggtgctcttgctgaacaccagcactcctgaacaggag
tatttgacggagcggctgcgagctgaaggagtcactcatcttcctcaaactgtgaccagt
gatgtgcagagtgctgacagatataacgtgtacactaaaggaggagtgctgtttgtcact
agccgaatcctagtggtggatttcctgactgacagaatccctgctcacctagtaacagga
atcctggtgtaccgggcacataatatcattgagtcttgtcaggaggctttcattttgaga
ctttatcggcagaaaaacaaaaccggcttcatcaaggcctttacagataaagccacgtcc
ttctcttcaggattctgtaaagtcgagcgtgtcatgagaaacttgtttgtgaagaaactt
tttctctggccaagattccaagcatcagtgaacgcaacgctggacaaacacaagccagat
gtggtggagctgcacgtgactctgactccagcaatgagagccattcagagctccattctg
gacatcatgaatgcctgcctgaaagagctgaagcgctacaaccccacactggaagcagaa
gacctttctttggagaacagcctgggcactgcctttgagaaaacaattcgtcattacctt
gacccactgtggcatcagctggggtccaggaccaaatctcttgttcaggacctgaagatc
ttaagaacccttcttctctacctcactcagtacgactgtgtcaccttcctcaatctgctg
gagtctttgagaaccagccagaaaagttttggtagtaattcaggttggttgttcctggac
tcaagcatgtctatgtttgtaaatgctcgcagtcgtgtgtatcgcattcaggagtctaag
aaaaaactgaaagttggagagactgagcagaaacaaaacctagcgcctccgaaaagagag
cttgtgcttgagaagaatccaaagtgggaagcacttacagaagtcctacaggagattgag
aaagaaaacagcaaatctgagcacgaaccaggccgagtgttgatatgcgccagtgatgac
agaacctgtgctcagctgaaggaatacatccaaaaagggccagaacacctactgaaccgc
ctttattcacgcactattggaaaagaagatcctcagcctgatttactgaagcttgacaaa
ggctggcaaaagaaagactctgctaggagcaaaggaaaaaacagccgtcagaaaagaacc
aaagccaactcaaagaaaccggcaaagatggagaaactgtcaagagtctctcaggacgat
agtgctgataaggacctaaatgagaacagtgaagatgaaggagggttgattgaagaggag
gaagaagaggagattgttctggatctatcatctgatgattattatggtattctgaaagag
ccactgactgtcattcacccactgaagggatgcagtgacccctacagtctgacccgcgtg
ctgcatgaggttgaccccatgtttgtcgtcttgtacgatgctgaactcagttttgtgcgg
cagctggagatttataaagcatgcaggcctggaaaaccactccgtgtgtattttctcata
tatggaggctcaacagaagaacagagatatcttacagcattaaacaaagaaaagcaagcg
tttgagcacctcataagggaaaaggccagcatggttgtgccagaagaaagagaaggtaga
gaagacaccaatctagatcttgtccgcagtcaggaacctgctagtgccgccacaaacacc
cgcaaagcagggggacttgaagaggttaaagagcctcatcggatcatcgtggacatgaga
gagtttcgcagtgaacttccttcgcttctgcatcgacgtggtctggacatcgaacccgtc
accttagaggtcggcgactacatactgacgtctgacatctgcgtagagcgcaaaagcgtc
agcgacctcattggctccttacagagcggacgcctttacacacagtgcctctccatgact
cgattctaccgccgtcctgtgttgctcatcgagtttgaccccgctaaaccattctccctg
gtggcccgcagtgactttcggcaggagatctcagccaacgatgtcacctccaaactgacc
cttctcaccctccatttcccccgccttaggctcctctggtgcccttcgccgtatgtgacg
gcagagctgtttcaggagctcaagcatggccgtaccgaaccggacgccagcacagctcag
gcagttacagcggagtcagagactgtgaccgaatctgcagatctgtacaatcctggacct
tacgacttcctgctgcgtatgcctggagtcaatgtgaagaacgtcaagagtctgataaaa
catgtttcctgcctcgctgatcttgtgacatttagccaggagacgctcagtgagattttg
ggcagcagcagcaatgccaggatgctttatgaattcatacacaatcctatggatgtgcgg
cccattcagaagaataagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (38)   

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