KEGG   Danio rerio (zebrafish): 393746
Entry
393746            CDS       T01004                                 
Symbol
viml
Name
(RefSeq) vimentin like
  KO
K07606  vimentin
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    393746 (viml)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    393746 (viml)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:dre04812]
    393746 (viml)
   04147 Exosome [BR:dre04147]
    393746 (viml)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     393746 (viml)
Cytoskeleton proteins [BR:dre04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     393746 (viml)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   393746 (viml)
  Exosomal proteins of other cancer cells
   393746 (viml)
SSDB
Motif
Pfam: Filament Filament_head TolA_bind_tri DUF1664 Laminin_II Tropomyosin
Other DBs
NCBI-GeneID: 393746
NCBI-ProteinID: NP_957067
ZFIN: ZDB-GENE-040426-1743
Ensembl: ENSDARG00000044501
UniProt: Q6PBS2
Position
2:50391331..50409763
AA seq 447 aa
MSTSSYRKRFGDVSRSSALSSRQTFSSSARTRVSFGASSSPVIYASKSAKVRSSAAMPRL
TSETLDFNLSDALNTEFKANRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILSAELEQLR
GQRSSRIADLYEEEMRDLRRQVDLLTTEKTRAEVMRDNLAEDVERLKEKLQDEMLQREDA
ENSMKSFRQDVDNAALARVDLERKVESLQDELAFLKNLHDEELAELQTQIQGQQVQVEMD
MAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANRNNEALRLAKQETNEY
RRQVQAITCELDALRGTNESLERQMREMEENFGMESSGFQDTIGRLEEDIGNMKDEMARH
LREYQDLLNVKMALDIEIATYRKLLEGEESRIAAPLPNFSSFNLRETMLESKLVPENTFT
KKVLIKTIETRDGQVINESTQNHDDLE
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgtctacctcttcatatagaaagagattcggagatgtgtcccggagcagcgctttatcc
agtcgccagactttcagctcctccgcgcgcacacgagtgtcttttggcgcgtcctcgtct
ccggttatttacgcgtcgaaaagcgccaaagtccgaagtagcgctgccatgccacgactt
acatccgagactttggattttaacctctcggacgctttaaacacggaattcaaggcgaat
agactgaatgaaaaggcgcagatgcagtcgctgaatgaccgcttcgctagttacatcgag
aaggtgcgctttctggagcagcagaataagatcctgagcgcggagctggagcagctgagg
ggtcagaggtcatctcgcatcgcagatctctatgaggaggagatgcgggatctgaggcgg
caggtggatctgctgaccaccgagaaaacacgagctgaagtgatgcgagacaacctggct
gaagatgtagagcgactcaaagagaaactgcaggacgagatgcttcagcgggaagatgca
gagaacagcatgaagagtttcagacaggacgtggacaatgcggctcttgctcgagtggat
ctggagaggaaagtggagtctcttcaggacgaactggccttcctgaaaaacctccatgat
gaggagctggcagagctgcagactcagattcagggccagcaggtgcaggtggagatggac
atggctaaacctgatctgacagccgctctcagagacgtcagactgcagtatgaaaacctg
gcaagcaaaaacatacaggagtcagaggactggtacaaatccaagtttgcagacctgacc
gaagctgctaacagaaataatgaagctctgcgactggccaagcaggagaccaatgagtac
cggcgtcaggtgcaggcgatcacctgtgaactggacgctctcagaggaacaaacgagtct
ctagagcgtcagatgcgggagatggaggagaacttcggcatggagtcatctggttttcag
gacaccatcggccggctggaggaggacattggcaacatgaaggacgagatggcgagacac
ctgcgtgaataccaggacctgctcaacgtcaagatggcgctagacatcgagatcgcaacc
tacagaaaactgctggagggagaggagagcagaattgctgctcctcttccaaacttctcc
tcctttaatctgagagaaacaatgctcgagtccaagcttgttcctgaaaacacatttact
aagaaagttcttattaaaaccattgagaccagagatggccaggtgatcaatgagtcgacg
cagaaccacgatgatctggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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