KEGG   Danio rerio (zebrafish): 405811
Entry
405811            CDS       T01004                                 
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
  KO
K09446  interferon regulatory factor 5
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04620  Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    405811 (irf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dre03000]
    405811 (irf5)
Transcription factors [BR:dre03000]
 Eukaryotic type
  Helix-turn-helix
   Tryptophan clusters interferon-regulating factors
    405811 (irf5)
SSDB
Motif
Pfam: IRF-3 IRF
Other DBs
NCBI-GeneID: 405811
NCBI-ProteinID: NP_001314746
ZFIN: ZDB-GENE-040426-2587
Ensembl: ENSDARG00000045681
UniProt: B0S682
Position
4:complement(13605600..13614936)
AA seq 516 aa
MSGQPRRIRLKPWLLAQINSGKYPGLHWLNQERRLFRIPWRHATRHMPTLEEENTIFKAW
ALETGKYQEGIDEPDPAKWKANLRCALNKSREFRLNYDGTKDTPVQPYKIYEVCDQSVNG
DAVEDEEEELQNFVHLSIDPRVGEPSNYPAYPPRVDVPFTSPIGDSYNPAHHNPPMNLIG
DIHNNPNGGASMVAHLAQPSTGPSEFPSQRAIKVEQGAFPIHGGGLQNGMGMGTGVIPPP
VLQDVVTHPVGPPAIVDSPMQEVPSQAENQIHPCISELLSSPHMLPLTDLDIKFQYRGRT
AGSLTVSNPQGCRLYYGNLAPTLEQVALFGPVTLQQVLFPGTAEIQNEKQRFYTDHLLDV
MDRGLILEITGQDIYAIRLCQCKVFWSGPGVLEQGPPNPMEREIRIRVFSLNKFLQALIL
YQKGEAPTPPPFEIYFCFGEDWPDRKPKEKKLIIVQVVPVVARILTEMFSGELSWSTDSI
RLQISNPDLKDHTVEQFKEIHRLLQSQSAHPNWPTN
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgagtggtcaaccacggaggatccgtctgaagccatggctgctggcacagatcaacagc
gggaaatacccaggactgcattggctcaatcaagagcgtagactctttcggatcccttgg
agacatgccacccgtcatatgcctaccctggaggaggagaacactatttttaaggcttgg
gctctggaaaccggcaagtaccaggaaggaatagatgagcctgatccagccaaatggaaa
gctaacctccgctgtgccctaaacaaaagtcgggagttcagactcaactacgatggcact
aaggacacccccgtgcagccttataagatctatgaggtgtgcgatcagtcagtcaatgga
gatgccgtagaggatgaggaagaagagctacaaaactttgtccacctttccattgacccc
agagtgggcgaaccttccaactacccagcgtaccctcctagagttgacgttccctttact
tctccgattggtgacagttataatcctgcccaccacaaccctccaatgaacctcatagga
gacattcacaataaccctaatggaggtgcttctatggtcgctcatctggcccagcctagc
actggaccttctgaatttcccagtcagagagctatcaaagttgaacaaggagcatttcct
attcatggcggcggactgcagaatggtatgggaatggggactggagtcataccacctcct
gttcttcaagatgtagttactcatcctgttggacctccagccatagtggacagcccaatg
caggaggtgccatctcaagcagagaaccagattcatccctgcatctcagaattgctgagc
agcccacacatgctgcccttaactgatctggatatcaagttccagtataggggtcggacg
gctggttctctgacggtcagtaaccctcagggttgtagactttactacggtaacctggcg
cccacactggagcaggtggcgctgtttggtccagtcactctgcagcaggtgctgtttcca
ggaacggctgagatccagaacgagaagcagaggttctacaccgaccatctgctggacgta
atggaccgagggctgattttggagatcacgggacaggatatctacgccatccgactgtgc
cagtgtaaagtgttctggtctgggcccggtgtactcgagcagggtccacccaatccaatg
gaaagagagataaggatcagggtcttcagtctgaacaagttccttcaggctctcattttg
tatcagaaaggagaggcgcccactccaccaccctttgagatctacttctgctttggggaa
gactggcctgaccgaaagcctaaggagaaaaagctcatcattgtccaggtggttccagtt
gttgccagaatccttaccgagatgttttcaggtgagctctcgtggtctacagacagcatt
cggttgcagatctccaaccccgatttaaaggaccatacagtggagcagttcaaagagatt
cacagacttttgcagagtcaaagcgcacatcccaactggccgactaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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