KEGG   Danio rerio (zebrafish): 406543
Entry
406543            CDS       T01004                                 
Symbol
pabpn1
Name
(RefSeq) polyadenylate-binding protein 2 isoform 2
  KO
K14396  polyadenylate-binding protein 2
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    406543 (pabpn1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    406543 (pabpn1)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     406543 (pabpn1)
SSDB
Motif
Pfam: RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 406543
NCBI-ProteinID: NP_001098602
ZFIN: ZDB-GENE-040426-2401
Ensembl: ENSDARG00000045373
UniProt: Q6NUT4 A7YYD9
Position
24:complement(14559334..14577559)
AA seq 232 aa
MAEFGNGLAEESLLDSDPGHSELEDPGVGDEEPGLDEGEAAIEDPELEAIKARVREMEEE
AEKLKELQNEVEKQMNLSPPPAGPVIMSIEEKIEADGRSIYVGNVDYGATAEELEAHFHG
CGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGI
STTDRGFPRARFRSRGGNFSSRARYYSGYTPPRGRGRAFRGRGRTTSWYSPY
NT seq 699 nt   +upstreamnt  +downstreamnt
atggcggagtttggtaacggactggcagaggagtctctgctggactcagacccgggtcac
tcagaacttgaagacccaggcgttggcgatgaagaaccgggattagacgagggggaggcc
gctattgaagatccggagctggaggcaattaaagcccgggtgagagagatggaggaggag
gcagagaaactgaaggagctacagaacgaggtggagaaacagatgaatctcagtcctcca
cctgctggccctgtcattatgtccattgaagagaagatagaagccgacgggaggtctatt
tacgttggaaatgtggattatggtgctacagctgaggagttggaggcacatttccatggc
tgtggatctgtaaacagagtcactatcttgtgtgataagtttacaggacatcccaaaggg
tttgcttatatagagtttgcagacaaggagtctgttaggacagccatggcactggatgag
tccttatttagaggaaggcagattaaggttggggccaagagaacaaatcgtcctggcatt
agcaccacagaccgcggtttccctcgggcccgcttccgctcacggggaggaaacttctca
tcccgggcgcgttactacagtggctacacaccccccagaggcagaggacgggccttcagg
ggccgagggcgaacaacatcgtggtactccccttactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (13)   
   RefSeq(nuc) (3)   
   GenBank (5)   
   EMBL (5)   
Protein domain (2)   
   Pfam (2)   
All databases (39)   

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