KEGG   Danio rerio (zebrafish): 406564
Entry
406564            CDS       T01004                                 
Symbol
sfpq
Name
(RefSeq) splicing factor, proline- and glutamine-rich
  KO
K13219  splicing factor, proline- and glutamine-rich
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dre01009]
    406564 (sfpq)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    406564 (sfpq)
   03041 Spliceosome [BR:dre03041]
    406564 (sfpq)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     406564 (sfpq)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     406564 (sfpq)
Spliceosome [BR:dre03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    406564 (sfpq)
SSDB
Motif
Pfam: RRM_1 NOPS RRM_7
Other DBs
NCBI-GeneID: 406564
NCBI-ProteinID: NP_998443
ZFIN: ZDB-GENE-040426-2452
Ensembl: ENSDARG00000011564
UniProt: Q6NUU2
Position
19:40026015..40055391
AA seq 619 aa
MGMRGGMGMGMGMGMGMGMGMGMGMGNPNFRNQNQHHFQNRGPQMGGGFRQNQGNQGNQV
STQQKPQEPAQNKPVVQTPPAQGPGQAQQAANKGPTPQQTPTVAPPKIQSAPPKIQSPPP
KIQSPPPAQNNAKTPEIASPQNQQRKNLPKPAMGNGQKPPAPLKQEQTPAPTPPPAQQQQ
QQQQQQKQTPANEQSSQPQELKATLSLLRKPGEKTYTQRCRLFIGNLPNDITEPEFRKLF
AKYGEPSEIFINQGKGFGFIRLESRALAEVAKAELDDTPMKGRPLRVRFATHSAALSVRN
LSPFVSNELLEEAFSQFGLVERAIVIVDDRGRSTGKGIVEFSSKPAARKAMDRISDGVFL
LTSSPRPIVVELLEQYDDEDGLPEKLAQKNPSYQKEREQPPRFARPGTFEYEYSQRWKSL
DEMEKQQRQQVEKNICEAREKLETEMDDAYHEHQANMLRQDLLRRQEELRRMEELHSQEM
QKRKEMQLRQEEERRRREEEMMRQREIEEQLRRKREESYRMNNFMDNRDREMRMNTSGGM
GLSDMSFGSPNQKFSLTGMSFDGHQGLSGSTQGGLASNEMRNDRFQQGGSGGQRGIGAGN
SGFGRVREEFDGPAKKPRF
NT seq 1860 nt   +upstreamnt  +downstreamnt
atggggatgcgcggtggcatgggcatggggatgggtatgggcatgggaatgggaatgggg
atggggatgggaatgggaaacccgaactttcgaaatcaaaaccagcaccattttcaaaac
cgaggcccacaaatgggtggtggatttaggcagaatcagggaaatcaaggcaaccaggta
tctacacaacagaagccgcaggaacccgcacagaacaagcccgtcgtgcagactcctcct
gcgcaaggccccggtcaggcccagcaggccgccaacaaaggcccgacgccccagcagact
cccaccgtcgctccgccgaaaatccagtctgctccaccgaagatccagtctcctccgccg
aagattcagtctcctccgccagcacagaataacgcgaagacgccagaaatagcttcccct
caaaaccagcaaaggaagaacctacccaaacccgcgatggggaatggccagaagccgcct
gctcccttgaagcaagagcagacgccagcaccaacacccccaccagcacaacaacagcag
caacagcaacaacaacaaaaacagactcccgcaaacgagcagagctctcagccccaggaa
ttgaaggcaacgctctctttgctgcgcaagcctggggagaaaacatacacccaacgttgt
cgtctttttatcgggaaccttccaaacgacatcactgaacccgaattcaggaaattgttc
gcaaagtatggggaacccagtgagattttcatcaatcaaggcaaaggctttggattcatc
cgtctggaatcccgtgccttggcagaggttgcgaaagcagagttggatgatactccaatg
aaaggcagaccactccgagttcgcttcgctactcattctgctgcactttctgtgcgaaat
ctatctccgttcgtgtccaatgagctgctggaggaggcattctctcagtttggactggtg
gaaagggctatagtcatcgtggatgaccgtggacgctcaacagggaaaggcattgttgag
ttttcttctaagccagctgcccgcaaggccatggatcgcattagtgatggggtgttcctt
ctcacatcgtccccccgtccaattgtggttgaattgttggagcagtatgatgacgaggac
ggtttgcccgagaagcttgcacagaaaaaccccagttatcaaaaggaacgagagcaacct
cctcggtttgcccgtcctggcacctttgagtatgaatactcccagcgatggaagtccctt
gatgagatggagaaacagcagaggcagcaagtggagaaaaacatctgtgaagcccgtgag
aagctggaaacggagatggacgatgcatatcatgagcatcaagcgaacatgctcagacag
gatctccttagacgtcaagaggaacttcgccgcatggaggagctgcacagtcaggagatg
cagaagcgtaaagagatgcagcttaggcaagaagaggaacgtcgtaggagagaggaggag
atgatgcggcagagggaaatcgaagaacaattgaggcgcaaacgcgaggaatcttacaga
atgaacaacttcatggataatagagacagggagatgagaatgaacacaagtggaggcatg
ggattgtctgatatgtcatttggatcaccaaaccagaagttctcattgaccggaatgagc
tttgatggacaccagggactaagtggatcaacacaagggggcctagcgtccaacgaaatg
cgcaatgatcgtttccagcaaggtggctcagggggtcagaggggcattggtgctggaaat
tcaggatttggcagggtccgtgaggaatttgatggacctgccaagaagccacgcttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (53)   

Download RDF
DBGET integrated database retrieval system