KEGG   Danio rerio (zebrafish): 407733
Entry
407733            CDS       T01004                                 
Symbol
pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03013  Nucleocytoplasmic transport
dre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    407733 (pnn)
   03015 mRNA surveillance pathway
    407733 (pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    407733 (pnn)
   03041 Spliceosome [BR:dre03041]
    407733 (pnn)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     407733 (pnn)
Spliceosome [BR:dre03041]
 Complex C
  Other components
   EJC/TREX
    407733 (pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 407733
NCBI-ProteinID: NP_001166041
ZFIN: ZDB-GENE-060519-3
Ensembl: ENSDARG00000015851
UniProt: F1QT45 Q66HU9
Position
17:13099476..13110122
AA seq 667 aa
MAVAVRSLQDQLEKAKEGLKSVDENIRKLTGRDPGELRPGQNRRLTIPGPGGGRGRGINL
LRRGLSDSGGGPPAKLRDIDGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESTVSTERLKRRQEIEQKLEV
QAEQERKKVECERRELFEERRAKQTELRLLEHKVELAQLQEDWNAHNSKLIKFIRTKTKP
PIFYLPGRMCSATQKLLEESQKKLNGVFDERREAFAEQINKMEARPRRQSQRTGDKEMEG
SRRAEETKKEDQEEGKAGAGRAGNRHVVEMEDEDEDVVEEEAEESSEVRERDEDQEQEQE
QGEEKEEKNEESERKAEEDEEEEDEDPGAVEVKEDEEEQMEVTEVVGEVEAQGKLQVESP
EATVEEVGNVRIEEEQEVESETQQEVTADSQQTPESQTETQPEESKEPQADAPSPNETQQ
DSKEEEAAVPESQQLQAEPEPEPEVPSQEPSQELSEEPQAAKTDTKEAGEEADDARGRAK
VRAKKSKSRSSSSSSSSSSSSSSSSGSSSSSSGSSSSSSGSSSSSSSRSRSRGRDRENRD
HKRRRRPSDRERRRSGSERAHKSSKSSGREGKGSKDKTSKPDRKRTSSEGRRSRSERDRK
SDRKDRR
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggcggtggccgtgcgaagtttgcaagaccagctcgaaaaagccaaggaaggcttaaag
agcgtggacgagaatattcgaaaactaaccggcagagatccgggtgaattaagaccgggt
cagaatagaagactgaccatcccaggcccaggaggaggtagggggcgtggaatcaatttg
ctgaggcgtggactctcagatagcggtggaggacccccagccaaactgagagacatcgac
ggggcactcttgaggctggcaggggatcagcgagccaggagagattcacgccatgacagc
gacgctgaggatgatgatgacgtcaaaaaaccagcgttgcagtcatctgtggttgctacc
tccaaggaacgtacgcgccgagatctcattcaagatcagaccatggatgagagaggaaag
cagaggaaccggcgcatgtttggcctgttgatgggaacgttgcagaagtttaaacaggag
tctactgtgtctacagagcggttaaaaagacggcaagaaattgagcagaaattggaagtg
caggcagaacaggagcgtaaaaaagtggagtgtgaaaggagagagctctttgaagaaaga
cgtgccaaacaaacggagctgcgacttctggagcacaaagtggagctcgctcaactgcaa
gaagactggaatgcacataattctaagctcatcaaatttattcgcacaaagaccaaaccc
ccgatcttctatttgcctgggcgaatgtgctccgctactcaaaagctccttgaggagtca
cagaaaaaactcaatggtgtgtttgatgagagacgtgaagcctttgctgagcaaatcaac
aaaatggaagctcggccaaggcgtcagtcccagaggacaggggacaaagaaatggagggc
agccgtcgggctgaagaaacgaagaaagaagatcaagaggagggtaaggctggtgcaggc
cgggcaggtaacaggcatgttgtggagatggaggacgaggatgaagatgtagtagaggag
gaagcagaggaaagctcagaggttagggagagagatgaggatcaggagcaggagcaggaa
cagggagaagagaaggaagagaaaaatgaggagagtgagaggaaagcagaggaagatgag
gaggaagaggatgaagatccaggagcggttgaggttaaggaagatgaggaagaacagatg
gaggtcactgaggttgtgggggaggttgaggcacagggtaagttgcaggttgagagtcca
gaagcaacagttgaagaggtaggtaatgtaagaattgaggaagagcaggaggtagaaagt
gagactcagcaggaagttacggcagactcccagcaaactcctgaaagccagacggaaacc
cagcctgaggagagtaaagagcctcaagcggatgccccgagccctaatgagacccaacaa
gacagcaaagaagaggaagctgctgtgcctgagtctcaacagctgcaggctgagcctgaa
ccagaaccagaagtcccttctcaagagccgagccaagaactctcagaagagccgcaagca
gccaaaacagacacaaaggaagctggagaggaggccgatgatgctcgcggacgagccaaa
gtcagagccaagaagagcaagagccgaagtagcagcagctcttcttccagctcctcctcc
agctcgtcctcaagtggctccagctcctcttctagcggctccagcagcagctcctccggc
tcatcttcatcgtccagttcacgctctcgtagtcgcggccgggatcgagaaaaccgggat
cacaaacgccgccggagaccttcagaccgagagcggaggaggagtggcagcgagagggca
cacaaatcctccaaaagtagtggacgggaaggcaaagggtctaaagacaaaacctccaaa
cccgaccgcaagaggacaagctctgagggaagaaggtctaggagcgagagggatcggaag
tctgatcggaaagatcgccgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (15)   
   RefSeq(nuc) (1)   
   GenBank (7)   
   EMBL (7)   
Protein domain (2)   
   Pfam (2)   
All databases (88)   

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