KEGG   Danio rerio (zebrafish): 415211
Entry
415211            CDS       T01004                                 
Symbol
puf60b
Name
(RefSeq) poly(U)-binding-splicing factor PUF60-B
  KO
K12838  poly(U)-binding-splicing factor PUF60
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    415211 (puf60b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dre03041]
    415211 (puf60b)
Spliceosome [BR:dre03041]
 Complex A
  U2 snRNP components
   U2 related factors
    415211 (puf60b)
 Complex B
    415211 (puf60b)
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 415211
NCBI-ProteinID: NP_001002121
ZFIN: ZDB-GENE-040625-116
Ensembl: ENSDARG00000001241
UniProt: Q6IQE0
Position
7:41146543..41158142
AA seq 502 aa
MENGQGTGSKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQVAAQ
RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
EAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDD
DIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG
KAVTPPMPLLTPTTPGGLPPAAAVAAAAATAKITAQEAVAGTVLSSLASPAHILSQQMGL
PQAVLAAQAPGIITGVTPARPTLPVVPQVGLVNPVLASPPVTAPASMGTPTSAVQLHTEV
KREEDSRRTAEDHSAPVGNGQDSELERLSVSASAGRQAAIQSKSTVMVLRNMVGPEDIDD
DLEGEVMEECGKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFSDAGEMNKAIQALNNRWF
AGRKVVAELYDQDRFNSSDLTA
NT seq 1509 nt   +upstreamnt  +downstreamnt
atggagaatggacaaggcacagggtcaaagcttggattaccgcctcttactcctgagcaa
caggaggcgctacagaaggctaagaagtatgccatggaacagagcatcaagagtgtttta
gtgaaacagaccatcgcccaccagcagcagcagctcacaaacttacaggtggcagcacag
aggcagcgagctctggccatcatgtgtcgtgtgtatgtgggctccatttattacgagctg
ggggaagataccatccggcaggccttcgcaccctttggtcccattaagagcatcgatatg
tcttgggattctgtcaccatgaaacataagggctttgcctttgtggagtatgaggttcct
gaagcggctcagctggccttggagcagatgaactctgtcatgctgggtgggaggaacatt
aaggtgggtcggccaggtagcattggacaggcgcagcctatcattgaacaactggcagag
gaggcacgtgcctacaaccgaatctacgtagcctctatccaccctgatctgtctgacgac
gatatcaagagcgtctttgaggcctttggaaagattaaaagttgtatgctggcacgagaa
cccaccacgggaaagcacaagggcttcggatttatcgaatatgaaaagcctcagtcatcg
ctggatgctgtctcatccatgaacctgtttgacctcggcggtcagtatctaagagtgggc
aaggctgttactccacccatgcctctgctaacacctacaactcccggaggtttgccccct
gctgcagctgtggccgctgctgctgccaccgccaagattactgcccaggaggctgttgct
gggacagtgctgagttctcttgcctcaccagctcacattctcagtcagcaaatgggactt
ccacaggctgtactggctgcccaggcccctggcattatcacaggtgtgacacctgctcgc
cccactctccctgtagtcccgcaggtgggtttggtcaacccagttctggcatccccacca
gtcacagcacctgcttctatgggaacaccaacatctgcagtgcaattgcacacagaagtg
aagagagaggaagacagcaggcgaactgcagaagatcacagtgcaccggttggcaatgga
caagacagtgaactggagcgtctcagcgtcagcgcaagtgcaggaagacaagcggccatt
cagtccaagtcaacggttatggtgttgcgcaacatggttggtccagaggacattgacgat
gacctggaaggggaagtgatggaggaatgtgggaagtacggggctgtgaaccgggttatc
atataccaggagcgacagggtgaggaggatgatgccgagataatagtgaagatcttcgtg
gagttttctgatgctggtgaaatgaacaaggccatccaagctctcaacaaccgctggttt
gcaggtcgcaaggttgttgccgagttgtacgatcaagatcgttttaatagcagtgacctc
actgcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (31)   

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