KEGG   Danio rerio (zebrafish): 432372
Entry
432372            CDS       T01004                                 
Symbol
cpsf1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    432372 (cpsf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    432372 (cpsf1)
   03019 Messenger RNA biogenesis [BR:dre03019]
    432372 (cpsf1)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     432372 (cpsf1)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     432372 (cpsf1)
SSDB
Motif
Pfam: CPSF_A MMS1_N UspB
Other DBs
NCBI-GeneID: 432372
NCBI-ProteinID: NP_001108153
ZFIN: ZDB-GENE-040709-2
Ensembl: ENSDARG00000034178
UniProt: A0A8M1NHR0
Position
19:complement(11897631..11950455)
AA seq 1449 aa
MYAVYRQAHPPTAVEFAVYCNFISSQEKNLVVAGTSQLYVYRIIYDVESTSKSEKSSDGK
SRKEKLEQVASFSLFGNVMSMASVQLVGTNRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHIPMVRVDPENRCAVMLVYGTCLVVLPFRKDTLADEQEGIVGEG
QKSSFLPSYIIDVRELDEKLLNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNIMQKVHPVIWSLSNLPFDCNQVMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSL
NSLTNGTTAFPLRPQEEVKITLDCSQASFITSDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLRYTEKLQETPMEEGKENEEKEKQPPN
KKKRVDSNWAGCPGKGNLPDELDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCASASM
GEPAFLSEEFQTNPEPDLEVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCHDMWTVIY
CEEKPEKPSAEGDGESPEEEKREPTIEDDKKKHGFLILSREDSTMILQTGQEIMELDTSG
FATQGPTVYAGNIGDNKYIIQVSPMGIRLLEGVNQLHFIPVDLGSPIVHCSVADPYVVIM
TAEGVVTMFVLKNDSYMGKSHRLALQKPQIHTQSRVITLCAYRDVSGMFTTENKVSFLAK
EEIAIRTNSETETIIQDISNTVDDEEEMLYGESNPLTSPNKEESSRGSAAASSAHTGKES
GSGRQEPSHWCLLVRENGVMEIYQLPDWRLVFLVKNFPVGQRVLVDSSASQSATQGELKK
EEVTRQGDIPLVKEVALVSLGYNHSRPYLLAHVEQELLIYEAFPYDQQQAQSNLKVRFKK
MPHNINYREKKVKVRKDKKPEGQGEDTLGVKGRVARFRYFQDISGYSGVFICGPSPHWML
VTSRGAMRLHPMTIDGAIESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPWPVR
KIPLRCTVHYVSYHVESKVYAVCTSVKEPCTRIPRMTGEEKEFETIERDERYIHPQQDKF
SIQLISPVSWEAIPNTRVDLEEWEHVTCMKTVALKSQETVSGLKGYVALGTCLMQGEEVT
CRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCSGFLVSAIGQKIFLWS
LKDNDLTGMAFIDTQLYIHQMYSIKNFILAADVMKSISLLRYQPESKTLSLVSRDAKPLE
VYSIEFMVDNNQLGFLVSDRDKNLMVYMYLPEAKESFGGMRLLRRADFNVGSHVNAFWRM
PCRGTLDTANKKALTWDNKHITWFATLDGGVGLLLPMQEKTYRRLLMLQNALTTMLPHHA
GLNPKAFRMLHCDRRTLQNAVKNILDGELLNKYLYLSTMERSELAKKIGTTPDIILDDLL
EIERVTAHF
NT seq 4350 nt   +upstreamnt  +downstreamnt
atgtacgcggtgtaccgtcaggctcacccgcccaccgcagtggagtttgccgtttactgc
aacttcatctccagccaagagaaaaacttggtggtggcaggaacatctcagctgtacgtc
tacaggatcatttatgatgtggagagcacttccaagtctgaaaagtcatcagatggcaag
agtcgtaaagagaaactggagcaggtggcatctttctctctctttggaaatgtgatgtca
atggccagcgttcagctggtgggcaccaacagagacgccttgcttctcagcttcaaagat
gccaagctgtcagtagtggagtatgaccctggcacgcatgatctcaagactctgtcgctg
cattattttgaggaaccggagttgagagatgggtttgttcagaatgtgcacattcctatg
gttcgagtggatccagagaatcgatgtgctgtcatgctggtgtacggcacttgcctggtg
gttctgcctttcaggaaggacacgcttgctgacgaacaggaggggattgtgggagagggg
cagaaatctagtttcctacccagctacatcatcgatgttcgtgaactggatgagaaactc
ctaaacatcatcgatatgaagtttctccatggctactatgagcccacactgcttattctg
ttcgagcccaatcaaacatggccagggcgtgtggcggtgcgtcaggacacttgcagtatt
gtggcgatctctctaaacatcatgcagaaggttcatccagtcatctggtctctgagtaac
ctgccctttgactgcaatcaggtcatggctgtccccaaacccatcggtggagttgtggtg
tttgctgtgaattcgttgctgtatcttaatcagagtgttcctccgtttggagtgtctctc
aacagtctgactaacggaaccacagctttccctttgagacctcaggaggaagtaaagatc
accctggattgttctcaagcctccttcatcacctctgacaagatggtcatctcactaaaa
ggaggagaaatttatgtgttgacgctcatcactgatggcatgagaagtgttcgtgcgttt
cactttgataaggctgctgccagtgtcctgactacctgtatgatgactatggagccaggc
tatctgtttttgggctctcgcctgggaaactcactgctgctcaggtacactgagaaactc
caggaaacacccatggaggagggcaaagagaatgaggagaaggagaaacagcctccaaat
aagaaaaaacgtgtggattccaactgggcagggtgtccaggaaagggcaatctacctgat
gagctggatgaaattgaggtgtatgggagtgaagctcagtcaggcactcagctggccaca
tactcatttgaggtttgtgacagcatactaaacattggaccctgtgccagtgcctccatg
ggagaaccagcttttctgtctgaagagtttcaaaccaaccctgagccagatctggaggtg
gtggtgtgttcaggatatggcaagaatggagcactgtctgtattacagaaaagcatcaga
ccacaggtggtgacgacgttcgaacttcctggatgccatgacatgtggacagtcatatac
tgtgaggagaaacccgaaaagccttcagctgagggtgatggagagagtcctgaggaggag
aagcgcgagcccacaatagaggatgacaagaagaaacacggcttcctcatcctcagcaga
gaagactccaccatgattctccagacgggtcaagagatcatggaactggacaccagtgga
ttcgccacacagggtcctacagtttacgcgggcaacatcggagacaataaatacatcatc
caggtgtcccccatgggcatcagactgctcgagggagttaatcagctccactttatccct
gtggacctgggctctcccatagtgcactgctctgtggccgatccttacgtggtcatcatg
acggcagagggagtggtcactatgtttgtcttgaagaatgactcgtatatgggaaagagt
caccgcctggcacttcagaaaccacagatacacacgcaatcacgtgttattacgttatgt
gcatatcgcgatgtcagtggtatgttcacaactgagaacaaggtcagcttcctggcaaaa
gaggaaattgctatcagaaccaactcagagacagaaaccatcatccaggacatcagtaat
acagtggatgatgaagaggagatgctgtacggggagtcaaaccccctgacgagccccaac
aaagaagagtccagccgtggctctgcagcagcaagctccgctcacacaggaaaagagagc
ggctccggcagacaggagccctcacactggtgcctgctggttagagagaatggagtcatg
gagatctaccagcttccagactggcgtttggttttcctggtgaaaaatttcccagtcggt
cagcgtgttttggttgacagctctgccagccagtcagctactcaaggggagcttaaaaaa
gaggaagtgacgaggcaaggtgacattccattggtcaaagaggttgctcttgtgtcatta
ggctacaaccacagccgtccctaccttctggctcatgttgaacaagagcttctcatctat
gaggcctttccgtacgaccagcagcaagctcaaagcaacctgaaagtgcgcttcaagaag
atgcctcataacattaactacagagagaagaaggtcaaagtgaggaaggacaagaagcct
gagggtcagggagaggacactctcggcgtcaaaggtcgtgtggccagattcagatacttc
caggacatctctggatactcaggggtgtttatctgtggtccctctccacactggatgttg
gtgacctctcgcggggcgatgcgcctccaccccatgacaatagatggagccattgagtct
ttctctccctttcacaatatcaactgccccaaaggatttctctacttcaacaaacagggt
gagctgaggatcagtgtgttgccaacatacctctcttatgatgctccctggcctgtgcgc
aagatccctcttaggtgcaccgtccactatgtatcataccatgtggaatccaaggtgtat
gcagtgtgcaccagtgttaaagagccgtgcacgcgcatccccagaatgactggagaagag
aaggaatttgagaccattgaaagagacgagcgatatattcaccctcaacaggacaagttc
tcaattcagctcatctctccagtgagctgggaggcgattccaaacacacgcgttgacctt
gaggagtgggagcatgtgacgtgcatgaagacggtggctctgaagagtcaggagacagtg
tcaggactaaagggatacgtggctcttgggacgtgtctcatgcagggagaagaggtcacc
tgtagaggcagaatcctgattctggatgtgatagaggtggtcccagagcccggacagccc
ctcaccaagaacaagtttaaagtgctgtatgaaaaggagcagaaaggtcccgtcactgct
ctttgtcactgcagtggattcctggtgtctgctattggacagaagatcttcctgtggagt
ctgaaggataatgatctgacgggaatggcattcattgacacacagctctacattcatcag
atgtacagcatcaagaacttcatcctcgcagcagatgtgatgaagagcatctctctgctg
cgctaccagccggagagcaagacgctttcactcgtcagcagggatgcaaagccccttgag
gtttacagcatagagtttatggtagacaataaccagcttggttttttggtttcagacaga
gacaaaaaccttatggtctacatgtacctgcctgaagccaaagagagttttggaggcatg
cgtttgttgcggagagcagattttaacgtgggatcgcatgtgaacgccttctggaggatg
ccatgccgcgggacactggacacagccaacaagaaggccctcacctgggacaacaaacac
atcacctggtttgctacgctggatggtggtgtcggtctgcttttaccaatgcaggagaag
acgtaccgcagactgctgatgttgcagaacgctctcaccaccatgctgccacatcatgcc
gggctcaatccaaaggctttcaggatgctgcactgtgaccggcgaacgctccagaatgct
gtcaagaacatcctggatggagagctgctcaataaatacctgtatctcagtaccatggag
agaagtgaactggccaagaagatcggcacgacccctgacattatcttggatgatcttctg
gagattgaaagagtcactgctcacttctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
Protein domain (3)   
   Pfam (3)   
All databases (56)   

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