KEGG   Danio rerio (zebrafish): 445485
Entry
445485            CDS       T01004                                 
Symbol
gspt1
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A
  KO
K03267  peptide chain release factor subunit 3
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    445485 (gspt1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    445485 (gspt1)
   03012 Translation factors [BR:dre03012]
    445485 (gspt1)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     445485 (gspt1)
Translation factors [BR:dre03012]
 Eukaryotic type
  Release factors
   445485 (gspt1)
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 GTP_EFTU_D2 PAM2 MMR_HSR1
Other DBs
NCBI-GeneID: 445485
NCBI-ProteinID: NP_001003992
ZFIN: ZDB-GENE-040822-36
Ensembl: ENSDARG00000031048
UniProt: Q68EH0
Position
12:19362379..19383945
AA seq 564 aa
MDSRDTAPDSWEQEDDVEATADTELQSAFTGLNVNAPEFVPSFLSRGPPENATSDGTDVV
ASMEISEPVGAVENGETDASAVETWEQKGEPDKEEPGGGSPADTGCFGDEAQDEMMEEDE
EMPTPKLPPPPPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVEKRTLEKYEREAKE
KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQ
ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSLDRYE
ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKESSDLCPWYTGLPFIPHLDSLPIFS
RSSDGPLRLPIVDKYKDMGTVVLGKLESGSIAKAQQLIMMPNRHTVEVLSLLSDDVETEY
AGPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQIVIIEHKSIICPGYNAVLH
IHTCIEEVQISALICLVDKKTGEKSKTRPRFVKQDQVCIARLRAAGTICLETFKDFPQMG
RFTLRDEGKTIAIGKVLKLVPEKD
NT seq 1695 nt   +upstreamnt  +downstreamnt
atggactcgagagacactgcccctgattcctgggaacaggaggacgatgttgaggccacg
gctgataccgaacttcagtccgccttcaccgggctcaacgtcaacgctccggagttcgtc
ccatcctttctttcacggggtccaccggaaaacgccacgtctgatggcaccgatgtagtg
gccagcatggagatctcggagccagtgggtgcggtggagaatggagaaacagatgccagc
gcggtggagacgtgggagcagaaaggagagccggataaagaggagccaggaggtggatca
ccggcagacactggatgctttggagatgaagcgcaggatgaaatgatggaggaggacgag
gagatgcccacccccaaactgcctcctcctccaccggacgcccccaagaaggaacacgtg
aatgttgtgttcattggacatgtggatgcaggcaagtctacaattggtggacagattatg
tacctaactggtatggtggaaaaacgcacgctggagaaatatgaacgggaggcaaaagag
aagaacagagagacttggtatctttcctgggctctagacacaaaccaagaggaaagagac
aagggcaaaacagtagaagttggaagagcatactttgaaacagagaaaaagcactttact
attcttgacgccccgggccataaaagctttgtccccaacatgattggaggagcatctcaa
gctgacttggcagtgctggtcatctctgccagaaagggtgagtttgagacgggttttgaa
aagggaggtcagacgagggaacatgccatgctggccaaaacagctggagtcaaacatctg
atagtcctcatcaacaaaatggacgaccccactgtgaactggagcttggatagatatgag
gaatgtaaagagaagttagtgccatttctaaagaaagtgggatttaatccaaagaaagac
attcactttatgccctgttccggactgacgggagcaaacctaaaagaatcatctgacttg
tgtccctggtacacgggattaccattcattccacatctggacagcctgccaatcttcagc
agatcaagtgacggtcccctcagattgcctattgtggataaatacaaggacatgggcacg
gtagtgcttgggaaactggaatctggaagtatcgcaaaagcacaacaacttattatgatg
ccaaataggcacacggtggaggtgttgagtctcctctcagatgatgtggagacggaatac
gcggggcctggtgaaaacctgaagctccggctcaaaggcattgaggaggaagagattctc
ccaggctttatcctatgcaacgctgagaacctctgccactcaggacgcacttttgatgcc
cagattgtcattattgaacacaaatccatcatatgcccaggttacaatgcagtactacac
atccacacctgcatagaagaagtgcagatttcagcgttaatctgtctggtggataagaaa
acaggagaaaagagcaagactcgtccacgcttcgtcaagcaggaccaagtatgcatcgcc
cgtctcagggccgcaggaactatctgcttagagacttttaaagacttccctcagatggga
cgtttcaccttgagagatgagggtaagacaatcgcaatcggcaaggtgctgaagttggta
cctgagaaggactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (44)   

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