KEGG   Danio rerio (zebrafish): 447857
Entry
447857            CDS       T01004                                 
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03022  Basal transcription factors
dre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    447857 (gtf2h1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    447857 (gtf2h1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    447857 (gtf2h1)
   03400 DNA repair and recombination proteins [BR:dre03400]
    447857 (gtf2h1)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     447857 (gtf2h1)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     447857 (gtf2h1)
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 447857
NCBI-ProteinID: NP_001004596
ZFIN: ZDB-GENE-040912-164
Ensembl: ENSDARG00000026701
UniProt: Q66I03
Position
25:complement(3196855..3217115)
AA seq 550 aa
MASLSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGENTTFHFANESTALKDREAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRMSLNSVDHSPSSNNVQEVGISAAFLADIRPQTDG
CNGLRYNLTSDIIESIFRTYPTVKQKYAENVPHNMTEKEFWTRFFQSHYFHRDRINTGQQ
DIFSECAKQDEKGLKSMVTQGVKNPMVDLLALEDKTLDEGYGTAAAPPASNTANKTLREN
SNSAIIKRFNHHSAMVLAAGLRKAEAPSDQASETSSTDGNSRDSDFFQPPLKKVKLQEAI
EYDDLQNDSGRKTIALNLKKSDRYAHGPVPLQSQHYSTSQDIINSISIIQHEMRSYKPQL
TQVMSSSAASSAISALSPGGVLMQSAGQQTIHQLVPADVQSELKHLYTAAGELLRHFWSC
FPVNTPFLEEKVLKMKSNLERFQVTKLRPFQEKIQRQYLSTNLTGHLEEMFQAAYSKFQA
WQTRRMMRKT
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggcgtctctgtccgaggaggtgttgttggtggtgaagagggtacgtcagaggaaacag
gacgggacactgtaccttatggctgagaggatcgcctggggacctgagggaaaagaccgc
ttcactgtcagccacctctacgccgacatccgctgccagaagatcagtcctgacggtaaa
gccaagattcagcttcagctggttctgcacacaggagaaaacaccacttttcacttcgcc
aatgagagcacagcgctgaaggatagagaagccgccaaagagcttctccagcagctcctg
cccaagttcaagaagaaggccaataaagagctggaggagaagaacaggatgttgcaggaa
gaccccgtcctgttccagctctataaggacctggtggtgagtcaggtgatcagcgctgag
gagttctgggccaatcggatgagcctcaattcagtggatcactcgccctccagtaataac
gtacaggaagtgggcatctctgctgccttcctggccgacatcagaccacagacagacggc
tgtaatggcctgcggtacaatctgacctctgacatcatcgagtcgatcttcaggacttac
cctacagtcaagcagaaatacgcagagaacgttcctcacaacatgacggagaaggagttc
tggacacgtttctttcagtctcattatttccacagagatcgcatcaacacgggccagcag
gacatcttctctgagtgtgccaaacaggacgagaagggcctgaagtctatggtgacccag
ggagtgaagaacccaatggtggatctgcttgcactcgaagataaaacgttagatgagggt
tacggcacagcggcggctccccctgcgtcaaacacagccaacaaaacactcagagaaaac
agcaactccgccatcatcaagcgcttcaaccaccacagtgccatggtcctggcagccggc
ctgcggaaagcggaagcccccagtgatcaagccagcgagacgagcagcacggatggaaac
tccagagattcagatttctttcagccgccacttaaaaaggtgaaattacaggaagccata
gagtatgatgacctgcaaaacgactcgggccgaaagaccatcgctctgaacctgaagaaa
tcagacagatatgcccacgggccggtccctcttcagtcgcagcattacagcaccagtcag
gacatcatcaactccatcagcattatccagcacgagatgaggagctacaaaccccaactc
acgcaggtgatgtccagcagtgcggcgagctcagccatcagcgctctttcacctggagga
gttttaatgcagagcgcaggccagcagaccatccaccagttagtgcccgctgatgttcag
agcgagctgaagcacttatacacggccgccggagagctgctccgacacttctggtcctgt
ttccccgtcaacactccctttctggaggagaaggtgttgaaaatgaaatccaacctggag
aggtttcaggtgaccaagctccgcccctttcaagagaagatccagcgacagtatttgagc
actaatcttacaggccacctggaggagatgtttcaggctgcatacagcaaatttcaagcc
tggcagacacgccgaatgatgaggaaaacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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