KEGG   Danio rerio (zebrafish): 447935
Entry
447935            CDS       T01004                                 
Symbol
eloca
Name
(RefSeq) elongin C paralog a
  KO
K03872  elongin-C
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    447935 (eloca)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    447935 (eloca)
   03400 DNA repair and recombination proteins [BR:dre03400]
    447935 (eloca)
Ubiquitin system [BR:dre04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul2 complex
    Adoptor protein
     447935 (eloca)
   Cul5 complex
     447935 (eloca)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     447935 (eloca)
SSDB
Motif
Pfam: Skp1_POZ
Other DBs
NCBI-GeneID: 447935
NCBI-ProteinID: NP_001004673
ZFIN: ZDB-GENE-040912-120
Ensembl: ENSDARG00000045355
UniProt: Q66IB1
Position
24:12983420..12988855
AA seq 113 aa
MADVEERNYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNE
VNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
NT seq 342 nt   +upstreamnt  +downstreamnt
atggcagatgttgaagagaggaattatggtggttgtgaggggccagatgccatgtatgtg
aagctgatctcctcagatggccacgaatttattgtgaaaagagagcatgctttaacctct
ggcaccatcaaggctatgttgagtggacctggtcagtttgctgaaaatgaaaccaatgag
gtgaacttccgagagatcccgtctcatgtcctctccaaagtttgcatgtattttacctat
aaagtgcgctacaccaacagctcaacagaaatcccagaattccccattgctcctgagatt
gccctggaactgctcatggctgcaaacttcctagactgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (115)   
   KEGG ORTHOLOGY (1)   
   RefGene (109)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (136)   

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