KEGG   Danio rerio (zebrafish): 474353
Entry
474353            CDS       T01004                                 
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
  KO
K04984  transient receptor potential cation channel subfamily A member 1
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:dre04040]
    474353 (trpa1b)
Ion channels [BR:dre04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   474353 (trpa1b)
SSDB
Motif
Pfam: Ank_2 Ank Ank_4 Ank_3 Ank_5 Ion_trans
Other DBs
NCBI-GeneID: 474353
NCBI-ProteinID: NP_001007067
ZFIN: ZDB-GENE-050106-1
Ensembl: ENSDARG00000031875
UniProt: Q5UM14
Position
24:13635005..13714119
AA seq 1120 aa
MQFGKELVRRNSFYKCVINEDETEESADVFELAFKGKASAIDRLIQKGPEHLSLRDENGA
SLLHYASAGGNLDIIRLIVSIVGPEVLNVQDEQGRTPLHWAVEQDQQQSCAVLLDLGADP
NILNNALMGPLHLAVTKQYNHLAEVLLSCDKTNSNLEGDLGNTPVMLACSNNNCQALQIL
IKRGAKMCIQNKLGHYPIHTVAFAGAKEAMEMVLKIGEELGVSSTLHINYLDKSKSTPLH
LAVRGGNIEVIKLCILKGAKVEQHQSGKCTALHFACSQGSLEAVKIMLSSYNRTEDIVNI
RDGANRTPLHRATLFDHVELAEYLISKPNTLSLDLICLGKGAEIDSIDCKGLSPLLLASS
CSAWKTVAYLLSIGADFKIKEKTGRNFLHFVILQPKGLKNLPETVLQSTAVKEMLSDEDV
EGCTPLHYACKLGIHDSVKNMLGLNICLGQKSREKKSALHFAAEYGRINTCHRLLETLTD
SKMLNDWDEKGLTPLHLASRAGHAQVVDLLLRKGALFQSDYKGWTCLHHAAAEGYTQTMK
ILLAANVKLLDEKNEDGNTALHIAAQAGHVSAVLLLLDRGAEIALNDADNSFLHEAVRNE
RREVVNATIEHERCDESMTSFKAKSRCVVLDIIEFLPESFQHLLDQCITESDHDANSQDY
HIMYNFQWLQAPIQLKKYAKTDKTKAFQPLAALNAMVRYNRLELLIHPLSRKYLEMKWTA
YGSKVHFLNLAIYLLGLLPLTYLILNLRPSQDFSKGNGTSVIMVPVSFSEQQYLISVCII
MVIVMNVYSICKEVVQLAQQRVNYFTDFSNPADWSAAISALVFVVPMCCSVEATWQWEAG
AYAILTSWIGFLLYFQRFERIGIYVVMFNGIVRTLVCIMVLFVFLLLAFGLAFYALMLHR
PEFSSISLALAQTFVMTVGELNYQSTFLNSYEEGHMAFPAITYFVFVFFVLLMPILLMNL
MIGLAVGDIAEVQRNAELKRIAMQIDLHTALEEKLPYWFLKRVDKPSTVVYPNKCKKVLL
EALVHGEIQNTVRTRLNLCSRKEGLLERELHKQKNRLKEMSCMLEKQHNLLKLIIQKMEI
TSEADEYDGPQNHGALKQHTSSTSQKSKWVPLLQAIKAKK
NT seq 3363 nt   +upstreamnt  +downstreamnt
atgcagtttggaaaggagttagtgaggcgaaacagcttctacaaatgtgtgataaacgag
gacgaaacggaggagtctgcagatgtctttgagttggctttcaaaggaaaggcttctgcc
atcgatcgtctgatccagaaaggtccagaacacctaagcctcagggatgagaatggagcc
agtctgctgcactatgcttcagctggaggaaacctggatatcattcggctcattgtttcc
attgtgggccctgaggtgctgaatgtgcaggatgagcagggccgaactcctctgcactgg
gctgtggagcaggatcaacaacagagctgcgctgtactgctggatctgggtgctgacccc
aacatcctcaacaatgccctgatgggccctctgcacctggctgtcaccaaacaatacaat
catctagcagaggtccttctgtcttgtgacaaaaccaatagcaatctggagggggatctg
ggaaacacccctgtcatgctggcctgctccaataacaactgccaagctctccagatcctg
atcaagcgcggtgccaagatgtgtattcagaacaagctgggtcactatcccattcatact
gttgctttcgcaggtgccaaagaggccatggagatggtattgaaaattggagaagaactt
ggtgtatcatctacattgcacattaattatttggataagtccaaaagcacacctcttcat
ctggctgtacgcggaggcaatatcgaggtgatcaaactctgcatcttgaaaggagccaaa
gtagaacaacatcagagtggcaaatgcacggccctccactttgcctgcagtcagggttct
ctggaggctgtcaaaatcatgctttcctcttacaacagaacagaagatatcgtcaacatt
cgggatggagccaatcggacacctttgcatagagctacgctgtttgatcacgttgagttg
gctgaatatcttatttcaaagcctaatacactgtcattggatctcatttgtcttggaaag
ggagcagaaattgactctattgactgtaagggactgtctccgcttctgctcgcctccagc
tgcagcgcttggaaaacagttgcatatctgttgtccattggtgcagattttaaaatcaaa
gaaaaaacaggtcgcaacttcctccactttgttattcttcaacccaaaggcctgaaaaat
cttcctgagacggttttgcagagcaccgccgtgaaggagatgttgtctgatgaggatgtt
gaaggctgcactcctctgcactacgcctgcaagcttggcatccacgattcggtcaaaaat
atgctgggtctcaatatctgcttgggtcaaaagtcacgggagaagaaatcagcgcttcac
ttcgctgcagaatatgggcgtataaatacatgccaccggctgctggagaccctcacagac
tctaaaatgctgaatgattgggatgaaaagggtctgacgcccctccatcttgcttcaagg
gcaggacacgctcaagtagtggatctgctgcttaggaagggagcactgtttcaaagtgat
tacaagggctggacctgtttacatcatgcagcagctgaaggatacacacagacgatgaaa
atcctgctagcagccaatgtgaaactactggatgaaaaaaatgaagatgggaacacagcc
cttcatatagcagcacaagctggacatgtaagtgctgttttgctgttattggacagagga
gctgaaatcgctctcaacgatgctgacaactcttttttgcatgaagctgtgcggaatgag
agaagagaagtagtgaacgccaccattgaacatgagcggtgtgatgagtcaatgacgtca
tttaaagcgaaatcccgctgtgttgtgctggacatcatagagttcctcccagaatctttt
cagcaccttttggaccagtgtattacagaatctgatcatgatgccaatagtcaggattat
catatcatgtacaattttcaatggcttcaggctcccatacagttgaagaaatatgctaaa
acagacaaaacaaaagcatttcaaccactggcagcattgaatgccatggtgcggtacaac
cgtctggagctcctcattcaccccttgagccgaaaatacctggagatgaagtggacggca
tatggaagcaaagttcatttcctaaacttggcgatatacctgcttggattgttgcccctc
acatacctcatcctcaatctgagacccagccaggacttctccaaaggcaatggcacatct
gtcatcatggtgcccgtatcttttagcgagcaacaatatttaatctccgtgtgtataatc
atggtgatcgtcatgaatgtgtattcgatttgcaaagaggtggtacagttggctcagcag
cgagtaaattacttcacagatttctcaaaccctgcggactggagtgcagctattagcgct
ttggtttttgttgtacccatgtgctgcagtgtggaggccacatggcaatgggaagctgga
gcttatgctattctgacttcatggattggctttctgctttactttcagagatttgagcgg
attgggatttacgtggtgatgtttaatggaatcgtacggaccctggtgtgcatcatggtt
ctttttgtcttccttttgctggctttcggcttggctttctacgctctgatgctccacagg
ccggagttcagttccatcagcctagcgttagcgcaaacgtttgtgatgacagtaggagag
ctaaactaccaaagcacatttcttaactcctatgaagaaggccacatggctttcccagcc
atcacttatttcgtttttgtgttttttgttcttctcatgcccattcttctcatgaaccta
atgattggtttggctgtaggagacattgcagaggtacagagaaacgcagagctgaaaagg
attgctatgcagatagatcttcacactgcccttgaggagaaactaccttactggttcctg
aagcgagtggacaaaccctctaccgtygtctatcccaataaatgcaagaaagtgcttctg
gaggccttggtgcatggtgagattcagaacacagttcgaactcgtctaaacctttgctca
cggaaggaagggcttttggagagagagctgcacaagcagaagaacaggttgaaagaaatg
tcgtgcatgctggaaaaacagcataacctgttgaagctgattatccagaagatggaaatt
acatctgaagctgatgaatatgatggtccacagaatcatggagctctaaaacagcacacc
tcatccacctcacagaaatcaaagtgggtcccgttactgcaagcaatcaaggccaagaag
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (64)   

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