KEGG   Danio rerio (zebrafish): 553733
Entry
553733            CDS       T01004                                 
Symbol
polr1e
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA49
  KO
K03005  DNA-directed RNA polymerase I subunit RPA49
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    553733 (polr1e)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    553733 (polr1e)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Pol I specific subunits
     553733 (polr1e)
SSDB
Motif
Pfam: RNA_pol_I_A49 pRN1_helical
Other DBs
NCBI-GeneID: 553733
NCBI-ProteinID: NP_001018540
ZFIN: ZDB-GENE-050522-251
Ensembl: ENSDARG00000006434
UniProt: Q501W9
Position
1:complement(19637312..19648227)
AA seq 413 aa
MAATCSWKTCEETEQNTFIVKFSNGNVKNAEELDFTVFKHSNASNPRKKNRRIVVADSDR
LPYVGSNFGSGSLQSNNMCKYFVGVLDKQTMQMKVHSAQLFNMLPVIPGEATEAESENQP
STFRDKVDALIEAFGTNKQKRALSSRRLNAVGNETLHQAVAQAASNIIDQKGVEALRNEV
IETEAQSDAALFLPPCNANADKLEDVYPFDQLLTPNEFESLKEVGAKYATLSSEDLQKMR
DNHCPQTVLKHLETLSKDEADRDRQCRCAWYLSFVIRASLQKRISFKFGSDDGCPRIIIN
KVLKNFTVESFHNGSLRNTVSMSMRMKMASYCLALLLHMGGQTANLTLLHRDMSISENKM
LEVAKAMGLTLSRQNALGKEGGLIEDEHRMVSLVLPLVHYDRRTERKKRKRMN
NT seq 1242 nt   +upstreamnt  +downstreamnt
atggcggcgacctgttcgtggaaaacatgtgaagaaacggaacagaatacttttattgtt
aagttctctaatggaaatgtgaaaaatgccgaggagctggactttactgtcttcaaacac
tcaaatgcatcaaatcccagaaagaaaaacagacgaatagtggttgcagattcagatagg
cttccctatgtagggagcaattttgggtctggatcgctgcagtctaataatatgtgcaag
tattttgtgggagttcttgacaagcagactatgcaaatgaaagttcatagtgctcagctg
ttcaatatgctgcccgttataccaggtgaagcaacagaagctgaaagcgaaaatcaaccc
tcaacattcagagataaggtggatgctctcatcgaagcttttgggacaaataaacagaag
cgggctctgagctccaggagactcaatgcagtgggcaatgaaacgctccatcaggctgtg
gcacaggccgccagcaacatcatagaccagaaaggagtagaagctcttcgtaatgaagtg
attgaaacggaggctcagagtgatgcagccctcttcctccctccatgcaatgctaatgcg
gataaactagaggatgtttacccctttgaccagctgttgactccaaatgagtttgaatcc
ctgaaagaggttggagcgaagtacgcaaccctgagctctgaagacctgcagaagatgaga
gataatcactgtccgcagacagttctcaaacatcttgaaacactttccaaagacgaggcg
gatcgagacagacagtgtcgttgtgcctggtacctttcctttgtcatcagagcctcgcta
cagaaacgaatttcctttaaatttggtagtgacgatggatgtccacgaatcatcatcaac
aaagtgctgaagaatttcaccgtagagagtttccacaatggcagtctcaggaacacagtg
tcgatgtccatgcgcatgaaaatggcttcttactgtctggctttactgcttcacatgggt
ggccagactgcaaacctcacactcctacacagggacatgagcatcagcgaaaacaaaatg
ttggaggtggcaaaagccatgggactgaccctgtcccgccaaaacgccttaggcaaagaa
gggggcttgatagaagacgagcatagaatggtctctctggtgcttcctctggtgcattat
gatcgacggacggaacgcaagaagcgcaagaggatgaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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