KEGG   Danio rerio (zebrafish): 557200
Entry
557200            CDS       T01004                                 
Symbol
limch1b
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X2
  KO
K24422  LIM and calponin homology domains-containing protein 1
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:dre04990]
    557200 (limch1b)
Domain-containing proteins not elsewhere classified [BR:dre04990]
 LIM domain-containing proteins
  Other lim domain-containing proteins
   557200 (limch1b)
SSDB
Motif
Pfam: DUF4757 CH LIM
Other DBs
NCBI-GeneID: 557200
NCBI-ProteinID: XP_009289278
ZFIN: ZDB-GENE-030131-9210
Ensembl: ENSDARG00000103774
UniProt: A0A8M3B082
Position
14:16813762..17027395
AA seq 1198 aa
MASPASDAGRHLPLQAHHHHHHQHHHHQHHQTEPAPEPAVREAQRWIEAVTGRSFADRDF
RTGLDNGILLCELLSSIRPGLVKKINRLPTPVAAQDNVVLFLKGCEELGLKGSQLFDPGD
LQDTSTRTNKSPDNNKKLKNVLITIYWLGRAANSSATYNGPTLDLHEFEGLLSQMRKEAE
EWDSPKRSIRDSGYIDCWESERSDSLSPPRHARDDSFDSLDSIGSRSHQTPSPDGLLARG
YSDGRGSDSECDTPQRKIPDVRKDDMLVRRTSCSEPRTAVPFNQYLPNKANQGSYVPPPV
RRPRADRDESRKSWSNATSPVGGERPFSESETLSLELSAVVTGRDVHCVDSQQIDPDSKY
SRASPQNESPPKDPIFLNPQLSDPQIRSPLPKDTLHPSVQPQPQEQSHSDQEKMEEEEKD
RDGWATFCQSPPNPLDTLQSDLQMSHNPTAGNDTRSVSMIDMRSEEDLSPHSQVRHELMH
NQYNKLKEEEDHWQDDLAKWKSRRRSVSQDLIKKEEERKMMERLLSGDGGSQRRKSIKTY
REIVEEKERREQELHDAYRKARTPEEAAAVLHRYAQRFTISEAVLERLKLPKLLERSVSA
DPTRHSSLPISQDISSSFSASPNVLQYLRQQSLPAAKFTSMVEARVTGYSPEKGIVGDAE
CVSDPSRSHGPSLGPKPYRQSRAATAGMRTVKLDERVRVNGEREDDGLGIEKTGPQRNKA
EEEDSSHLQFFSSSCQHTDSDMTDSEVSVVQPTVHMLSSTRTAESPEKHRDTTEIEGRTV
PQVGDVPEFPKVLEINPDETVTDQEKTDERGMSDSLHDVIQMEISAQVSELTAEIPQKST
NESESSRPESYRTKAELAVSAQLTSLSSNPKLRRDFFAQSDMAEKAHENVPPSVLNLVNR
GEHFSWDPEEERNRQERWQKEQERMLQEKYRREQEKLKQEWEQAQKEVEEEERRYHEEEQ
KILEETVTPLTPHSPIAPPVLPKTQSTLHSQPDREYKQGPVEKQPSSENCRQRENGISEA
AQRKTESLQMTVSSPLQSCGSVGQRGQEDQSQDKQPTLQSSQDMPLGNRQIPQQNETWKK
NTTPPKPGGRKRSDSIENIGPNPSTSPSFTDTQAPPSPNRSVSGKKLCSSCGHPLGKGAA
MIIETLSLYFHIQCFKCGICKGQLGDTSTGTDVRIRNGLLNCHQCYIRSRSAGQPTTL
NT seq 3597 nt   +upstreamnt  +downstreamnt
atggcgagtccagcttcagatgcaggacggcatcttcctctgcaggctcatcatcaccac
caccaccaacaccatcaccatcaacatcatcagaccgaaccggcgcccgaacccgctgtc
cgtgaggcgcagagatggatagaggcagtgaccggcaggagttttgctgacagggacttc
agaacaggacttgacaacggcatcctactgtgcgaactgctgagctcaatcagaccgggt
ctggtgaagaagataaacagactgcccactcctgtagctgctcaggataatgtggtgctc
ttcctgaagggttgtgaggagttgggtttgaagggctcgcagttgtttgatcctggagat
ctacaggacacctccacgcgcaccaacaaaagtccagacaacaacaagaagttaaaaaat
gttctgatcactatctactggctgggccgagcagccaatagcagcgccacatacaacggg
cccaccctggacctgcacgagtttgagggactgctgtcacagatgagaaaggaagcagaa
gagtgggacagcccgaagcgtagcatcagggacagtggttatatagactgctgggagtct
gagcgcagcgattctctctctccgccgaggcacgcgcgagacgactccttcgacagcctg
gactccatcggctcacgctcccatcaaaccccctcgcccgacggcctgctcgcccgcggc
tacagcgatggccgcggcagcgactcggagtgcgacaccccccagaggaagataccggat
gtacgcaaggatgacatgttggtgcggcgaacatcctgcagtgagccacggaccgctgtt
cctttcaatcagtacctgcccaacaaagccaaccagggttcctatgtgcccccaccagtg
cgacgcccgcgtgccgacagagacgaaagccgcaaaagctggagtaacgcaacctcacct
gttgggggagagagacctttcagtgagagtgaaaccctttcgttagagttgtccgctgtg
gtaacaggacgtgatgttcactgtgtagattcacagcaaatagatcctgactctaaatac
tccagagcgtctcctcaaaacgagtctccccccaaagacccaatttttcttaatccacaa
ctcagtgaccctcagattagatccccccttcccaaagacaccctccatccttctgtccaa
ccccaacctcaagagcagagccactcagaccaggagaagatggaggaggaggaaaaggac
agagatggatgggccactttctgccaaagtcctccaaaccccttggatacccttcagagc
gacttacagatgtcccataatccgactgcaggaaatgataccaggagcgtgagcatgatt
gacatgagaagcgaggaagacttgtcaccacatagtcaagttcgacacgagctcatgcac
aaccagtacaacaagctgaaagaggaagaagaccactggcaggatgatttggccaaatgg
aagagtcgcaggaggagcgtgtcacaggacctgatcaaaaaagaagaggagaggaagatg
atggagagactgctaagtggagatggaggatcacagagaaggaaaagcattaagacgtac
agagaaatagtagaggagaaggagcgtcgtgaacaggagctgcatgacgcttatcgaaag
gctcgcacaccagaggaggcagcagctgtgctgcatcgctacgcccagcgattcaccatc
agcgaggctgttctggagcgcctcaaactgccaaagctgctggagaggagtgtgtcggct
gatcccactcgtcactcctctctccccatctcccaggacatctcgtcctctttcagcgct
tcccctaatgtgctgcagtacctaaggcagcagtctcttcccgcagctaagttcacatcc
atggtcgaggcaagggtgacgggatacagcccagaaaagggaattgtgggagatgcagag
tgtgtctcagatccatctcgctcacatgggccatcactgggtccgaaaccttacagacag
agcagagctgccactgctgggatgagaacagtaaagttggatgaaagagtgcgagtgaat
ggggaaagggaagatgacggcctcggcattgagaagacaggaccacagagaaacaaagca
gaggaagaagattcttctcatctacagttcttctcatcttcctgccagcacacagactca
gacatgacagatagtgaagtctctgtagttcagcccacggtccacatgctctcatccaca
cgcacagcagagagcccagagaaacacagagatactacagagattgaaggacggacggtc
ccgcaggtcggagatgtccctgaattcccaaaagtgttggagataaatccagatgagact
gttacagatcaagagaagacagatgagaggggtatgagtgactctctacacgacgtgatt
caaatggagatttctgcacaggtcagtgaactaacagctgagatcccacagaaatcaaca
aatgaatctgagtcatccagacccgaatcatacagaaccaaagcagagttggctgtcagt
gctcagttaacatcgttgtcaagtaatcctaaattgcgcagagatttcttcgcccaatca
gatatggctgagaaggctcatgaaaatgtccctccctcagtgctgaatctggtgaatcgg
ggtgaacacttttcttgggaccctgaggaagagcgcaatcgtcaggagaggtggcagaaa
gagcaggaacgcatgcttcaggaaaagtatcgacgtgagcaggagaagctaaagcaggag
tgggagcaggcgcagaaggaggtggaggaggaggagagacgctaccatgaggaggagcag
aagattctggaagagactgtgacccctttgaccccacactcaccaattgcaccgccagtc
cttcccaaaactcaaagcactttacactcccagcccgatcgggaatataagcaggggcca
gtggagaagcagccgagttctgagaactgcagacaaagggaaaacggcatcagtgaagca
gcacaaagaaagacggagagtttacagatgacagtaagttctcccctccaaagctgtggg
tcagttggtcagagaggacaagaagaccagagccaagataagcagccaacactacagtct
agtcaggatatgccactgggcaatagacagataccccaacagaatgagacatggaagaag
aatacaacaccaccaaaacctggtggacgcaagaggtccgactctatagagaacattggg
ccaaatccatcaacatcaccttcattcacagacacacaagcacctccatcaccaaacagg
tctgtcagtgggaagaaactgtgctcaagttgtggtcacccacttggcaaaggtgcggcc
atgattatagagactctcagcctttactttcacatccagtgctttaagtgtggaatctgt
aagggtcagttgggtgacaccagcacaggaacagatgtgaggatcagaaatggtctgctc
aactgccatcagtgctacatccgctcccgctctgctggtcaacccactacattgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (22)   
   RefSeq(nuc) (12)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (76)   

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