KEGG   Danio rerio (zebrafish): 562496
Entry
562496            CDS       T01004                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a precursor
  KO
K19719  collagen type II alpha
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04510  Focal adhesion
dre04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:dre00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    562496 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    562496 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:dre00536]
    562496 (col2a1a)
Glycosaminoglycan binding proteins [BR:dre00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   562496 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 562496
NCBI-ProteinID: NP_571367
ZFIN: ZDB-GENE-980526-192
Ensembl: ENSDARG00000069093
UniProt: Q2LDA1
Position
8:21195387..21219474
AA seq 1491 aa
MFRLLDSRTLLLLVATHSVLLSLVRCQQEDDQEEFGGCVQDGQQYADRAVWKPEPCRVCV
CDSGTVLCDEVICEDLNDCANPIISPGECCPICPADTDDPIGSLGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGTRGERGAKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPRGPPGPPGKPGSDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVL
GPQGPPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGATGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLVGRTGLRGLPGKDGETGPSGPPGPVGAVGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGAVGISGAKGDRGDSGEKGPE
GAPGKDGSRGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGNKGEQGESGQKGDSGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGPPGPNGNPGAAGPAGPSGKDGPKGVRGDAGPPGRAGDAGLRGPPGAPGEK
GEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPIGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGSPGDQGAAGPAGPSGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPVGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINGQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSAADAIKVFCN
METGETCVKPSTPKIPRKNWWTSKSKAQKHVWFGESMNGGFHFSYADGSQTPSTTTIQLN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIMDIAPMDIGGADQEFGVDIGAVCFL
NT seq 4476 nt   +upstreamnt  +downstreamnt
atgttcagattgctggattcacggactctcctgctacttgtggcaacgcatagcgttttg
ctatcgcttgtaagatgtcaacaagaagatgaccaggaagagtttggcggctgtgttcaa
gatggccagcagtatgcagaccgtgcggtttggaaaccagaaccgtgccgtgtctgcgtg
tgtgattcggggactgtgctgtgtgacgaggtcatctgtgaggatctgaatgactgtgcc
aatcccatcatttcacctggagagtgctgtcccatctgcccagctgacaccgacgaccct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattacagatgttgta
ggaccaagaggacctgctggaccaatgggacccccgggagagcagggaacacgtggagaa
agaggagctaagggtgagaagggaagtcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccacccggacccaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcctggcccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgct
ggtgcccttggaccccgtggcccacccggcccccctggaaaacccggaagtgatggtgag
gctggcaaacctggtaaagctggtgagcgtggacccccaggacctcagggagctcgtgga
ttccctgggacccctggactccctggcatcaagggacacagaggacacccaggtctggat
ggtgctaaaggagaggctggtgctgcaggtgccaagggtgaggcaggttctaacggtgag
agtggcgctcctggaccaatgggtcctcgtggtctgcccggtgagagaggtcgccctggt
gcaactggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcct
ggtcctgttggtcctgctggtgctccaggtttcccaggatcccctggatctaagggtgaa
gctggtcccactggggctcgtggacctgagggcgcacagggacctcgtggagaggctggt
acacctggatcacctggacccgccggtgcatccggtaaccctggtactgatggtattcct
ggagctaaaggatctgctggtgcttctggcattgctggtgctcctggtttcccaggacca
cgtggtccaccaggacctcagggagccactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggattcaaaggcgaggctggacccaagggagagcgtggtgttcta
ggacctcaaggacctcctgggccatcaggtgaagagggcaagagaggaccaagaggagag
cctggttctgccggacctcttggacctcctggagagagaggagctccaggtaaccgtgga
ttccctggccaggatggacttgcaggagcaaagggtgctcctggtgatcgtggtgttcca
ggtttgagtggaccgaaaggaggcactggagatcctggtcgccctggtgaacctggtctt
cctggagccagaggtctcactggacgccctggtgatgctggagctcaaggaaaagttgga
gcgactggtgcccctggtgaagatggccgccctggaccacctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacccaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttgttggacgcactggtcttagaggtttgcctggtaaagatgga
gagactggaccttctggtcctcctggccctgttggtgctgttggtgagagaggagaacaa
ggtcaacctggtccatctggcttccagggtctgcctggacctactggagcccccggagaa
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgccggtcccactgga
ccaagaggtgagcgtggtttccctggtgagagaggaggcgctggccctcagggtctccaa
ggaccaagaggacttccaggaactcccggaacagatggacccaagggtgcgattgggcca
gctggtgctgctggagctcaaggtcctcccggtcttcaaggcatgcctggtgagagagga
gctgttggtatctctggagctaaaggtgacagaggtgactctggagagaagggacctgaa
ggtgctcctggtaaagatggttcaagaggtttgactggtccaattggcccacctggtcct
tctggtcccaatggcgcaaagggtgaaactggtcctattggttcaattggtgctcctggt
gctcgtggtgcccctggtgatcgtggtgagattggtgcacctggacctgctggctttgct
ggaccccctggtgctgatggccaacctggaaataagggagagcagggtgaatcaggacag
aaaggtgattcaggagcccctggaccccaaggaccatcaggtgctccaggcccagtgggc
ccaactggtgtcacaggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggacgagttggaccccctggccccaacggtaaccctggtgct
gccggcccagcaggtccttctggtaaggatggtcctaagggagttcgtggtgatgccggt
cccccaggtagagcaggagatgctggactgcgtggacctcctggtgctcctggagagaag
ggagaggctggtgaagatggtcctcctggtcctgatggtccttccggccctgctggtctt
gctggtcaacgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttccctgga
cttccaggaccttctggtgagcctggcaaacagggagctccaggaggctctggtgaccgt
ggacctcctggccctgttggaccacctggattgactggacctgctggagagactggccgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccaattggtgctcctggagctcctggtgcccctggcgctcct
ggttcagttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggaccccctggacccgctggagctcgaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggccagaagggacacagaggattcact
ggtctgcagggtctgcccggacctcccggttctcctggagaccagggtgctgctggacct
gctggaccttctggtgctaaaggaccttcaggacctgttggacctgctggtaaggatggt
tctaatggtcagcctggacccattggtccacctggacctcgtggacgctctggagagtct
ggcccagttggtcctcctggtaaccccggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctggattgtctcagccagagaagggacccgatcctctg
cgttacatgcgtgcagatgaagcctccagctctctcagacaacacgatgtagaggtggac
gccactctgaagtccatcaacgggcagattgaggatatccgcagccccgatggctcccgc
aagaatcctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcccaaccttggtagcgctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaaaccaagcactcctaaaatcccacgcaagaactgg
tggacaagcaagagcaaggcccagaagcacgtgtggttcggagaaagcatgaacggcgga
ttccactttagctatgctgatggcagccagactcctagtactaccaccatccagctgaac
ttcctcaggctgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gtggcttacatggaccaagccacaggcaacctgaagaaggccattctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggcgtacttgaggat
ggctgcaagaagcacacaggtcaatgggccaagactgtgatcgagtacaaaactcagaag
acatccagactgcccatcatggacatcgctccaatggacatcggaggagcagatcaggag
ttcggagtggacattggcgcagtctgcttcttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
Protein domain (3)   
   Pfam (3)   
All databases (93)   

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