KEGG   Danio rerio (zebrafish): 563215
Entry
563215            CDS       T01004                                 
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04140  Autophagy - animal
dre04148  Efferocytosis
dre05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    563215 (vps41)
   04148 Efferocytosis
    563215 (vps41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    563215 (vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    563215 (vps41)
Membrane trafficking [BR:dre04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    563215 (vps41)
SSDB
Motif
Pfam: Clathrin Vps39_2 TPR_7 Vps39_1 TPR_19 TPR_17 zf-RING_5 zf-rbx1
Other DBs
NCBI-GeneID: 563215
NCBI-ProteinID: NP_001410716
ZFIN: ZDB-GENE-030131-6671
Ensembl: ENSDARG00000063573
Position
24:complement(9895930..9960305)
AA seq 854 aa
MAEVEEQGRKLSEESTDESEEEDTEEEPKLKYERLTNGVTEILQKDAASCMTVHDKFLAL
GTHFGKVFLLDIQGNVTQKFEISSVKINQISLDESGDHVGICSEDGKVQVFGLYTREGFH
ENFDCPIKVVALHPQFSKSNNKQFVTGGNKLLLYERNWLNRWKTSVLHEGEGNITSVKWR
GNLIAWANNVGVKIYDIGSKQRITNVLRDNTSLRPDMYPCSLCWKDNTTLIIGWGCSVKI
CAVKERDPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYYVKENSDHMEEEFRT
RPRLDIIQPLPEGCEEISSDALTVRNFQENQCRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVEKGDYDTAARKCQK
VLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHDFLKTDYEGFATLI
REWPGELYNNMAIVQAVNEHLKKDPTNSILLTTLAELYTYDQRYDRALEIYLRLRHKDVY
QLIHKHNLFSSIKDKIVLLMDFDKEKAVDMLLDNEDKISMDKVVEELKDRPELLHVYLHK
LFKRDHHKGQKYHERQISLYAEFDRPNLLPFLRESMHCPLEKALEICQQRHFVEETVFLL
SRMGNCRRALQMIMEELANVDKAIEFAKEQDDRELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILHDYNLQILLREGCKKILVADSLSLLQRMHRTQK
KGVRVDEENICESCHTPILPSDTAQAFGVVVFHCRHMFHKECLPSPGSIPGIQYCNICSA
KRRGPGSGILEMKK
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcggaagtggaggagcagggaagaaaactaagtgaagagtccacagacgagtctgag
gaagaggacacagaggaggagcctaaactgaagtacgagagactgaccaatggtgtgacc
gagatcttacagaaggatgcggccagctgcatgacagtgcatgacaagttcctggctctc
gggacgcactttgggaaggttttccttttggatattcaaggaaatgttacgcagaagttt
gaaattagttctgtgaaaattaatcagatcagtttggatgagagtggggatcatgttggc
atctgctctgaggatggaaaggtgcaagtatttggcctgtacaccagggagggcttccac
gaaaactttgactgtcccatcaaggttgtggcgctgcaccctcagttcagcaagtccaac
aataaacagtttgtgactggaggaaataagcttttgctgtatgagaggaactggctgaac
cgctggaagacttcagttctgcacgaaggagaaggaaacatcaccagtgtgaaatggaga
ggaaatcttatcgcctgggcaaacaatgtgggtgtgaaaatctatgacataggcagtaaa
cagcgcatcactaatgttttgcgggacaacaccagtcttaggccggatatgtatccctgc
agtctttgctggaaagacaacaccacgctgatcatcggctggggctgttctgttaagatc
tgtgctgttaaagagcgtgacccaacagagatgagggatctacccagtcgctatgttgag
atcgtgtcagcatttgagacagagttcttcatcagtggactggcacctttggcagatcag
ctggtcactctgtactatgtcaaagagaattctgatcacatggaagaggagttcagaaca
cggcctcgtttagacatcatccagccattaccagagggatgtgaagagatctcatcagac
gccctcactgtacgcaacttccaggagaaccagtgcagggactataggctcgaacactct
gagggagagtctttattctacatcatcagtcctaaagacatcgtagtggctaaagaaaga
gaccaggatgaccacattgactggcttttggagaagaagaaatatgaggaagcactaatg
gcagcagagatcagctttaaaaatattaaaaggcatgatgtacagaaaattggaatggcg
tacatcaatcatttggtggagaaaggagattatgacacagctgccagaaagtgtcagaaa
gtgctaggaaagaatatggatctttgggagaatgaagtgtacaggttcaaaacaattggc
cagttgaaagccatcagtcagtacttaccgagaggagacttgcgccttcgacctgctatt
tatgagatgatccttcatgacttcctcaagactgactatgagggttttgccacactcatt
cgtgagtggcctggagagctgtataacaacatggctatagttcaggcagtgaatgaacac
ctgaagaaggaccccaccaacagcattctcctcaccacactcgcagagctatacacatat
gatcaacgttatgatcgagctctggaaatctacctgagactgagacacaaagatgtttac
cagctcattcataaacacaacctgttctcctccatcaaggacaagattgtcttgctcatg
gattttgacaaagagaaagctgttgacatgctgctggataatgaagataaaatatcgatg
gacaaagtggtggaggaattaaaagacaggcctgagctcttacatgtgtatttgcacaag
ctgtttaagcgagaccaccataagggacagaagtatcatgagaggcagatcagtttatat
gctgagtttgaccgaccaaacctgctgcccttcctcagagagagcatgcactgcccatta
gagaaggctttggaaatctgtcagcagaggcactttgtagaagagacagtcttcctgctc
agtcgtatggggaactgcagacgggctctacagatgatcatggaggagctggcgaatgtg
gacaaggccattgagtttgccaaagagcaggatgaccgagaactctgggaggatctcatc
tcttactctattgacaaaccaccttttatcacaggcctcttgaataacattggaacccat
gtggacccaatcctgctcattcatcgcattaaagaagggatggagattcctaacctcaga
gactcactggtcaaaatcctacatgactacaatctacagattttactgcgggaaggctgt
aagaagatcttggtggccgattctctgtctcttctccagcggatgcacaggacacagaag
aaaggagtgcgggtggatgaggaaaacatctgtgagtcgtgtcacactcctattctacca
tcagacacggctcaagcattcggtgtggtggtgtttcactgcagacacatgttccacaag
gagtgtctgccgtcccctggatctatcccagggatacagtattgtaacatctgcagtgcg
aagcgcagaggaccaggcagcggcatcctggagatgaagaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (12)   
   RefSeq(nuc) (2)   
   GenBank (5)   
   EMBL (5)   
Protein domain (8)   
   Pfam (8)   
All databases (55)   

Download RDF
DBGET integrated database retrieval system