KEGG   Danio rerio (zebrafish): 563879
Entry
563879            CDS       T01004                                 
Symbol
si:ch211-81a5.1
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115 isoform X1
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    563879 (si:ch211-81a5.1)
   04121 Ubiquitin system [BR:dre04121]
    563879 (si:ch211-81a5.1)
Enzymes [BR:dre01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     563879 (si:ch211-81a5.1)
Membrane trafficking [BR:dre04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    563879 (si:ch211-81a5.1)
Ubiquitin system [BR:dre04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    563879 (si:ch211-81a5.1)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_2 zf-RING_11 zf-C3HC4 zf-RING_UBOX zinc_ribbon_9 zf-RING_5 zf-rbx1 zf-ANAPC11 zf-C3HC4_3 C1_2 Rad50_zn_hook HypA DZR
Other DBs
NCBI-GeneID: 563879
NCBI-ProteinID: XP_003200594
ZFIN: ZDB-GENE-060503-608
Ensembl: ENSDARG00000062900
UniProt: F1QQA9
Position
19:9004293..9019642
AA seq 301 aa
MAEAAAAPRHRFFCHCCKGEIDPKLPEYVCPRCESGFIEEVSENFSLLQNRDGAAGTGSD
DMTSQFAELWQLLFMEHSALLSEPSVTDALRSSGLQPAVADPASGTAGPVASVESLSDCT
EPQQNSPQTNSRQDQGQAVEGIVQQFLAGLFSNSDSAGPQTSSWSSALHSNPGDYAWGQG
GLDAVVTQLLGQSENSGPPPAEKEMISSLPTVSISSEQAACRLECPVCREEFSVGESVRQ
LPCLHYFHSSCIVPWLQLHDTCPVCRKSLDGEDRGFQPRPDPQETIPSPPDLPERSTFET
L
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcggaggccgctgctgctccacgacaccggttcttctgtcactgctgtaaaggtgaa
atagacccaaagctaccggaatatgtatgtcccagatgtgaatctggctttattgaagag
gtgtcagaaaacttcagtcttcttcagaatcgggatggtgctgctgggacaggcagtgat
gacatgacctcacagtttgctgagctgtggcagctgctcttcatggagcattcagccctg
ctctccgagccctcggtcacagacgcgctccgcagctccgggctccagccagcagttgct
gatcctgcctctgggacggcgggacctgtggcatccgtcgagagtctgtcagactgcacc
gagcctcaacaaaacagcccacagacaaactccagacaggatcagggacaggctgtggag
gggattgtacagcagttcctggcaggtctgttttccaattcagacagtgcaggtccccaa
acctcctcatggtccagcgcgctgcactcaaaccctggagactatgcttggggacaggga
ggtttggatgcggtcgtaacacagttgcttggtcagtctgaaaacagcggcccccctcct
gccgagaaggagatgatctcatctctgcccaccgttagcatctcctcagagcaggctgca
tgccggctggaatgccccgtgtgtcgagaggagttttctgttggggaatctgtccgacag
ctgccgtgtctgcactactttcacagcagctgtattgtgccctggcttcaactgcacgac
acctgtcctgtctgtcggaagagtctggatggtgaagaccggggttttcaaccacgacca
gatcctcaagaaacaatcccatcacctccagatttaccagaacgaagcaccttcgagact
ctttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (14)   
   Pfam (14)   
All databases (46)   

Download RDF
DBGET integrated database retrieval system