KEGG   Danio rerio (zebrafish): 80353
Entry
80353             CDS       T01004                                 
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein precursor
  KO
K06839  slit 2
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:dre00536]
    80353 (slit2)
Glycosaminoglycan binding proteins [BR:dre00536]
 Heparan sulfate / Heparin
  Axon guidance molecules
   80353 (slit2)
SSDB
Motif
Pfam: LRR_8 LRR_4 LRR_5 EGF LRRNT Laminin_G_2 Laminin_G_1 LRR_9 LRRCT hEGF LRR_1 DL-JAG_EGF-like JAG1-like_EGF2 EGF_3 Laminin_G_3
Other DBs
NCBI-GeneID: 80353
NCBI-ProteinID: NP_571810
ZFIN: ZDB-GENE-010306-3
Ensembl: ENSDARG00000004246
UniProt: Q9DE36
Position
1:23784073..23910040
AA seq 1512 aa
MFVLKSVVLCALLCGAGAQSCPSQCSCSGTAVDCHGQSLRSVPRNIPRNVERLDLNANNL
TKITKADFAGLKNLRVLQLMENKISSIERGAFQDLQELERLRLNRNNLQVLPELLFLGTT
KLFRLDLSENQIQGIPRKAFRGSTEIKNLQLDYNQISCIEDGAFRALGDLEVLTLNNNNI
SRLSVASFNHMPKLRTFRLHSNNLLCDCNVAWLSDWLRQRPRLGLYTQCMAPPSLRGHNI
AEVQKKEFMCTGPQSHSSCSVLQCPELCTCSNNVVDCRGKGLTEIPTNLPETITEIRLEQ
NSIKIIPAGAFAPYKRLRRIDLSNNQITELASDSFQGLRSLNSLVLYGNKITELPKGLFD
GLFSLQLLLLNANKINCLRVDSFQDLQNLNLLSLYDNKLQTIAKGTFSSLRAIQTLHLAQ
NPFMCDCHLKWLADYLQDNPIETSGARCTSPRRLANKRIGQIKSKKFRCSGVEDYRSKLG
GDCFADLACPEKCRCEGTTVDCSGQKLTKIPDHIPQYTAELRLNNNEFTVLEATGIFKKL
PQLRKINLSNNKITDIEEGTFEGASGVNELILTSNRLEGVHYSMLKGLGGLRTLMLRSNR
ISCVNNGSFTGLSSVRLLSLYDNLITSMSPGAFDTLHSLSTLNLLANPFNCNCHLAWLGE
WLRKKRIVTGNPRCQSPYFLKEIPIQDVAVQDFACEEGNDENSCSPLARCPAECSCLDTV
VRCSNKGLKVLPKGIPRDVTELYLDGNEFTQVPLELSNYKHLTLIDLSNNQISTLSNHSF
SNMSELLTLILSYNRLRCIPAKAFDGLKSLRLLSLHGNDIAVIPDGAFKDLSSLSHLALG
ANPLYCDCHMQWLSDWVKSGYKEPGIARCTGPGDMTDKLLLTTPSKKFTCTGPVDVSILA
KCNPCLSNPCKNDGTCSNHPVDFYRCTCPYGFKGQDCEEPIHACISNPCQNGGTCHLKDG
EENTHWCVCPEGFEGDECEINIDDCEDNDCENNSTCVDGINNYTCLCSPEYTGELCEDKL
DFCASELNLCQHDSKCILTAKGFMCECTPGYTGEHCEVDFDDCEDNKCKNGAQCIDAVNG
YTCVCPEGYSGLFCEFSPPMVLPRTSPCDHYDCANGAQCVVKDTDPVCQCLPGYEGVHCE
RLVSVNFINRESFLQIPSNLITEQANISLQIATDEDNGVLLYKGDNEHIAVELYRGRLRV
SYDSGSYPPSAIYSVETINDGSFHVVELVAKDQSLSLSIDGGSPKSINTANSPSPVPSPA
PLYLGGLPQQSGLASLRQGSGRNGSSFHGCIRNLYINDQLQDLTQFLLQEGVVPGCQPCQ
RSMCAHGQCHATGQSSFSCECEAGWTGPLCDQQVNNPCDGNKCIHGSCMAINSYSYSCRC
LPGFAGVLCDEEEQLSPCQYIACKYGRCRVSGLGKAYCECNSGYTGQSCDREMACRGERV
RDHYQTQQGYAACQSTEKVSRLECRGSCGDGTSCCAPLRSKRRKYTFQCTDGSSFVQEVE
KVVKCGCTKCPS
NT seq 4539 nt   +upstreamnt  +downstreamnt
atgtttgtgttgaaatcagtggtgctctgtgcgttgctctgcggggctggagcccagtcg
tgcccgtcccagtgctcctgcagcgggacagcggtggactgccacggccagagtctgcgg
agcgtgccgcggaacattccccgcaacgttgagcgactggacctgaatgcaaacaatctg
actaaaatcactaaggcagattttgcgggactgaagaaccttcgagttctgcagttaatg
gagaacaagatcagttcaattgaaagaggggcatttcaggatctacaagagctggaaaga
ctgcgtctcaacaggaataatcttcaggttcttccggagttgctgtttctgggcacgacc
aaactcttcagactggacctgagtgaaaatcaaatccaggggattcccagaaaagccttc
agaggatctacagagatcaaaaacctgcagctggactataatcagatttcctgcattgaa
gatggagcgttcagagctctgggtgacttagaagtactcacactgaacaacaacaatatc
tctcgtttgtcagtggccagttttaaccacatgcccaagctcaggacatttcgcctgcac
tctaataatctgctatgtgattgtaatgtggcctggctctctgattggctgagacagagg
ccccgccttggcctctacacacagtgtatggctccaccctcccttagaggccacaacatc
gcagaggttcagaagaaagagtttatgtgtacagggccccagtcacactcatcctgtagt
gtgctgcagtgtcctgagctctgcacctgcagtaataatgtagtggactgccgggggaaa
ggacttactgaaatacccaccaacctgccagaaactatcactgagattcgactggagcaa
aactccatcaagattattccagcaggagcttttgcaccttacaagcgactccgaagaata
gatctaagtaataatcaaataactgaattggcttcagactcctttcaaggtctccgttct
ttaaactctctggttttatatgggaataaaatcactgaacttcccaaaggcctttttgat
ggactgttctcattgcagctactattgctgaatgcgaacaagatcaattgtttgcgtgta
gattctttccaagacctgcagaatctgaatcttctgtcgctttatgacaacaaacttcag
accatcgcaaagggaactttctcttctctcagagctatccaaacccttcatctggcccag
aaccccttcatgtgtgactgccatttgaagtggttagcagattacctgcaagataaccct
attgagaccagtggagctcggtgcaccagtccccggcgccttgctaacaaacgtattggc
cagatcaagagcaaaaagttccgctgttcaggcgtagaagactaccgctcaaaactaggt
ggggattgctttgctgatttggcctgtccagagaaatgtcgatgtgaaggaaccacagtg
gactgctctggacaaaagctcaccaagatcccagaccacatccctcagtatacagcagaa
ctccgcttgaataataatgaattcacagtgctggaggctacaggaatcttcaagaagctt
cctcagttgcgcaaaatcaatcttagcaacaataagatcacagatatcgaagaaggcaca
tttgaaggggccagtggagtaaatgaactcatactgaccagcaatcgcttggagggggtt
cactacagcatgctgaaaggcctcggtggtctccgcacactgatgttgaggagtaacagg
ataagctgtgtcaataacggcagttttaccggtctgagctctgtgaggttgctttccctc
tatgataacctgatcacctccatgtccccaggagcctttgacacactacattcgctctcc
acattgaacttgctggccaatccgtttaactgtaactgccatctggcctggcttggtgaa
tggctccgcaagaaacggattgtcacaggcaacccccgctgtcagagcccctactttctc
aaggagatccctattcaagatgtagctgtacaagactttgcctgtgaagaaggtaacgat
gagaatagctgttcaccactggctcgctgtcctgccgagtgttcgtgtttggatacagtg
gttcgttgcagtaataaaggactcaaggttttgcctaagggcattcctagagacgttaca
gagctctatctcgatggcaacgagttcacacaagtccctctggaactatccaattataaa
cacctcactctcattgatttgagtaataaccagatcagcacattgtccaaccacagcttc
agtaacatgtccgagctgctcacactaattttaagctacaacagattaaggtgtattcct
gcaaaagcgttcgacggcctcaagtctctgcgcttgttgtctctccatggtaatgatatt
gctgtgatcccagatggagctttcaaagatctgtcctcactctctcacctggctctgggc
gcaaaccccctgtactgtgactgtcacatgcagtggctctctgactgggtaaagagtgga
tacaaggagcctggcatcgcccgctgtaccggtcctggagacatgactgacaaactgctg
ctcactacaccctctaagaaattcacatgcacaggtccagtggatgtaagcattttggct
aaatgtaacccttgcttgtccaatccctgcaagaatgatgggacctgcagtaaccatcct
gtagatttttacagatgcacctgcccgtatggttttaagggtcaagactgtgaggaacca
attcatgcatgcatcagtaacccctgtcagaatggaggaacctgtcatctgaaggatgga
gaggaaaacactcactggtgtgtgtgtccagaaggatttgagggtgatgaatgtgagata
aacattgacgactgtgaggataatgactgtgagaataactctacatgcgtggacggtatc
aacaactacacctgtctctgctcacctgaatacacaggggagctgtgtgaagataagctg
gatttttgtgcttcagagcttaacctgtgtcagcatgactccaaatgtattctgactgct
aaaggcttcatgtgtgaatgcactccaggttataccggtgagcactgtgaggtggatttt
gatgattgtgaagataataagtgtaaaaacggggctcagtgtattgatgctgtgaacggc
tacacgtgtgtgtgtccagaaggctacagtgggttgttctgcgagttttctcctccgatg
gtcctgccaagaacaagtccatgcgatcactacgactgtgccaacggtgcacagtgtgtt
gtgaaggacacggaccccgtgtgtcagtgtctgccaggttatgagggtgtgcactgtgaa
agactggtcagcgtcaacttcatcaacagagaatccttcctgcaaatcccctccaacctc
attacagaacaggccaatatatctctgcagatcgccacagatgaggataatggagtgttg
ctgtacaaaggagataatgaacacattgctgtggagctttacagaggccgactgagagtc
agttatgactctggatcatatcctccatctgcaatctacagtgtcgagacaataaatgat
ggcagctttcatgtagtggagctggtggcaaaggatcagtctctgtcactgtccattgat
ggaggaagcccgaaatccatcaacactgccaatagccccagcccagtgcccagcccggcc
ccgctttatcttggtggtcttcctcagcagtctggattggcctcgttgcgtcagggctct
ggcaggaatggctctagtttccatggctgcatccgaaatctctacattaatgaccaactc
caggatctcacccagtttttgctgcaggagggtgttgtgcccggatgccagccatgccag
cggagcatgtgtgctcatggccagtgccatgccactggacagtcctctttcagctgtgag
tgtgaggcgggatggactggcccgctctgtgaccagcaggtcaacaacccatgtgacggg
aacaagtgtatccatggctcgtgtatggccataaactcatactcgtacagctgccgttgt
cttccaggctttgcaggtgtgctgtgtgatgaagaggagcagctcagcccctgtcagtat
atagcatgcaaatacggccgatgtcgtgtgtctggactgggcaaagcctattgtgagtgc
aacagcggctacacggggcaaagctgcgacagagagatggcgtgtcggggggaacgggtc
cgagatcactatcagacgcagcagggctacgccgcgtgccagagcacagagaaggtctcg
cgtttagagtgtcggggcagctgtggggacgggacctcctgctgcgccccgctccgcagc
aaacgcaggaaatacaccttccaatgcacagacgggtcctcttttgtacaggaggtggaa
aaggttgtcaagtgtggctgcacaaaatgtccatcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (17)   
   UniProt (1)   
   RefSeq(pep) (16)   
DNA sequence (20)   
   RefSeq(nuc) (16)   
   GenBank (2)   
   EMBL (2)   
Protein domain (15)   
   Pfam (15)   
All databases (121)   

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