KEGG   Danio rerio (zebrafish): 100149268
Entry
100149268         CDS       T01004                                 
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03020  RNA polymerase
dre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100149268 (polr2b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100149268 (polr2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    100149268 (polr2b)
   03400 DNA repair and recombination proteins [BR:dre03400]
    100149268 (polr2b)
Enzymes [BR:dre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100149268 (polr2b)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100149268 (polr2b)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100149268 (polr2b)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100149268
NCBI-ProteinID: NP_001019632
ZFIN: ZDB-GENE-041008-1
Ensembl: ENSDARG00000098783
UniProt: A0A8M1N6S0
Position
14:complement(52380424..52408402)
AA seq 1174 aa
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtatgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgac
ctgtggcaggaggcctgctggattgttatcagctcttattttgatgagaagggtttggtg
cggcagcagctggactccttcgatgagttcatccagatgtctgtgcagaggatagtggag
gacgctcctcccatagacctgcaggctgaagcccagcacacatctggagaggtggaggaa
ccgcctcgttacctgctgaagtttgagcagatctacctgtccaaacccacgcactgggaa
agagacggcgctccgtcccctatgatgccgaacgaagccagacttcgaaatctcacgtat
tctgctcctctgtatgtggacatcacaaagaccatcataaaggacggggaggagcagcag
cagacgcagcatcagaaaacattcatcggcaagattcccatcatgctccgctccacgtac
tgtctgctgagcgggctgacggacagagatctctgtgagctgaacgagtgtccactggac
cccggaggatacttcatcatcaacggctcagagaaggttctgattgctcaggaaaagatg
gccactaacacagtgtatgtgttcgccaagaaagactccaaatatgcgtacaccggagag
tgcaggtcctgtctggagaactcgtccagacccaccagcaccatctgggtcagcatgatg
gcccgaggaggacagggagtaaagaaaagtgccatcggtcagaggatcgtctccacgctg
ccgtatatccggcaggaggtgcccatcatcatcgtgtttcgcgctttaggattcgtgtct
gacagagacattctggagcacatcatctatgacttcgatgatccggagatgatggaaatg
gtaaagccgtctctggatgaggcgtttgtgattcaggagcagaacgtggctctgaacttc
atcggctccagaggggccaaacctggagtcactaaagagaggagaattaaatacgctaaa
gaggttctgcagaaggaggtgctgccgcatgtgggtgtgtcagacttctgcgagaccaag
aaggcttactttctaggttatatggtccaccgtctgctgctggccgctctgggccgacga
gagctggacgacagagatcattacggcaacaagaggctggatctcgctggaccgctgctc
gccttccttttcagaggaatgttcaagaacctgctgaaggagatcaggatttacgcacag
aagttcatcgatagagggaaggacttcaatctggagctggccattaaaacacgcatcatt
tctgacggactgaagtattctctggccacggggaactggggtgacgtgaagaaagcccac
caggccagagctggagtctctcaggtgttgaatcggctgaccttcgcctccactctctcc
cacctgcggcgtgtaaactctcccatcggccgggatggtaagctggccaaaccgcggcag
ctccacaacacgctgtggggaatggtgtgtcctgcagagacccccgagggtcacgctgtg
ggtctggtgaagaatctggcgctcatggcctacatctctgtgggctcgcagccgtcaccc
atcctggagtttttggaggagtggagtatggagaatctggaggagatctctccagctgcc
atcgcagacgccactaagatctttgtgaacggctgctgggtgggcatccacaaagacccc
gagcagctgatgaacacgctgcgcaagctgaggaggcagatggacatcatcgtgtctgag
gtctccatgatcagggatatccgcgagcgagagatccgcatctacactgacgccggccgc
atctgcagacccctgctgatcgtggagaaacagaagctgctgctgaagagacgacacatc
gaccagctcaaggagagagagtacaacaactacagttggcaggatctggtggccagcggt
gtggtggagtacatcgatacactggaggaggagactgtgatgctggccatgacccctgat
gacctccaggagaagggcgtggcttattgctccacatacacgcactgtgagatccacccg
tccatgatcctgggcgtctgcgcatccatcattcccttccctgatcacaaccagtctccc
agaaacacctaccagtctgctatggggaagcaggctatgggagtgtacatcactaatttc
cacgtgcggatggacacgctggcacacgtgctgtattacccacagaaaccgctggtcacc
acacgctccatggagtatctacgcttcagagagctgcccgcaggaattaactccatcgtg
gcgatcgcctcatatactggatacaaccaggaggattctgtgatcatgaaccgctcagct
gtggaccgcgggttcttcaggtctgtgttctaccgctcgtacaaggagcaggagtctaag
aaaggctttgaccaggaagaaatcttcgagaaacctacgcgagagacctgtcaaggaatg
agacacgccatctatgataagctggatgatgacggtctgattgctccgggtgtgcgtgtg
tccggtgaggatgtgatcatcggtaaaactgtgactctgccagagaacgatgatgagctg
gacagcaccaaccgccgctacaccaagcgggactgcagcacgttcctgcgcaccagcgag
accggcatcgtggaccaggtcatggtcacgcttaaccaggagggatacaagttctgcaaa
atcagggtgcgctcagttcgtattccacagatcggggataagtttgccagtcgacacgga
cagaagggaacctgcgggatccagtacagacaagaggatatgccgttcacctgtgaggga
atcactccagatatcatcatcaatcctcacgccatcccatccagaatgacagtcggccat
ttgatcgagtgtctgcaggggaaggtgtctgctaataaaggagagatcggtgacgccacg
ccattcaatgatgctgtcaatgtgcagaaggtctccaacctgctgtctgaatacggctac
catctcagaggaaatgaggttctgtataacggcttcacgggtcgtaaactgacgtctcag
atcttcgtcggacccacatattaccagcgtctgaagcacatggtggacgataagatccac
tccagagcccgcgggccggtgcagatcctcaacagacagcccatggaggggcgatcacgt
gacggtggtctgcgtttcggagagatggagcgtgattgtcagatcgctcacggagctgct
cagttcctgaaggagcgtctgttcgaggcctcggacccatatcaggtgcacgtgtgtaac
ttgtgtggactcatggccatcgctaacacacgcacacacacctacgagtgcagaggctgc
cgcaacaaaacgcagatctctctggtgcggatgccgtacgcctgtaaactgctgttccag
gagctgatgtccatgagcatcgccccgcgcatgatgaccagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (18)   
   RefSeq(nuc) (2)   
   GenBank (8)   
   EMBL (8)   
Protein domain (7)   
   Pfam (7)   
All databases (96)   

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