KEGG   Desulfocapsa sulfexigens: UWK_00011
Entry
UWK_00011         CDS       T02473                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
dsf  Desulfocapsa sulfexigens
Pathway
dsf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UWK_00011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsf03019]
    UWK_00011
   03016 Transfer RNA biogenesis [BR:dsf03016]
    UWK_00011
Enzymes [BR:dsf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     UWK_00011
Messenger RNA biogenesis [BR:dsf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     UWK_00011
Transfer RNA biogenesis [BR:dsf03016]
 Prokaryotic type
  tRNA degradation factors
   UWK_00011
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 PTA_PTB S1_2
Other DBs
NCBI-ProteinID: AGF76600
UniProt: M1P9Y5
Position
complement(13376..15448)
AA seq 690 aa
MFKRVEVEVGDKTISLETGKVAKQADGSVIMRTGGTVVLVTVVAGKENKPELGFLPLTIE
YQERMAAVGRIPGNYFRREIGRPSDQEVLTCRIIDRPLRPLFADGYFSETQIIATVLSAD
QQNDPDILALNGASCALSISDIPFGGPIAGARVGYVDGEYVLNPTKDELKNSRMDMIVAC
TSDAVTMVEGKVDTMSEDEVLNAIFFVFDSVQPLIAMQIDLRKSHGKAKRIVEPVPVNEE
LLAKVQEIAAEGMAKVIVTADKMERGSAYDELKKSVIASLDPEGENAKEISELLSGYKKK
IMRAQIVNDEVRLDGRAFNQVRPISSEVTYLPQTHGSALFTRGETQSIVTATLGSQRDSQ
RVETLQGEENNRFMVHYNFPPFCVGEARFLRGPSRRDIGHGTLALRGLSAVLPDEEDFPY
SIRVVSDIMESNGSSSMATVCGGSMAMMDAGVPLKAPVSGIAMGLIKEDDKIVILSDILG
DEDHLGDMDFKIVGTADGITALQMDIKIDGVDRDIMKQALSQAQEGRIHILGEMAKGINA
SREEVAQHAPKYFSYKINTDKIRDIIGPGGKIIKEMSAEYDATIEVDDSGLVKMFTKDGS
KADALLRKIQEMTATAEVGKVYKGIVKTIKDFGAFVEILPGTDGLVHISELANERVGKVT
DVVKEGDELEVKVLEVDSRGRIRLSRKALL
NT seq 2073 nt   +upstreamnt  +downstreamnt
atgtttaaaagagttgaagttgaagtaggcgacaaaaccatttcccttgaaaccggaaaa
gtagccaagcaggccgatggatcagtgataatgcggactggcggtaccgttgttcttgtt
acagttgttgctggaaaagaaaataaacctgaactgggttttctaccgcttaccatagaa
tatcaggaaagaatggccgctgttggtcgtatccccggtaactattttcgccgcgagata
ggacgccccagcgatcaggaagttcttacctgtcgcattatcgatcgtcctctccgtccg
ctgtttgccgatgggtatttttcagagacccagattattgccaccgtactttcagctgat
cagcagaatgatcctgatatcctagcattaaatggtgcatcctgtgcacttagcatttct
gatatcccctttggtggtccaattgctggtgctcgtgttggctatgtcgacggagagtat
gttttgaatcccaccaaagatgaactcaaaaattcccgtatggatatgattgtcgcctgt
accagcgatgcggtaaccatggttgaagggaaagtggatactatgagtgaagacgaggtg
cttaatgcaatattcttcgtttttgactctgtgcagccacttattgctatgcagattgat
cttcggaaaagtcatggtaaagcaaagcgcattgttgaacccgttcctgtaaatgaggaa
ctcctggctaaagttcaggaaattgccgctgaaggtatggcgaaggtaatagtcaccgct
gataaaatggaacgtggtagtgcctacgatgagctgaaaaagagtgtcatcgcgagtctt
gatccagagggtgaaaatgctaaagagattagcgaattgctctccggttacaaaaagaaa
atcatgcgagcccagattgttaatgacgaagttcgtctcgatggacgagcatttaaccag
gttcgtcctatcagcagtgaagtcacctatcttcctcagacccatggctcagctcttttt
acccgtggtgagactcagtcaattgtaactgcaacacttggaagtcagcgtgattcgcaa
cgagttgaaactcttcagggtgaggaaaacaatcgttttatggttcattataactttcct
ccattctgtgttggtgaggctcgtttccttcgcgggccatctcgtcgtgacattggacat
ggaacccttgcccttcgcggactgtctgccgtacttcccgatgaagaggattttccttat
tccattcgtgtggtttcggacatcatggagtcaaacgggtcctcttccatggccaccgtc
tgtggcggcagtatggccatgatggatgctggtgttccccttaaggcacctgtctctggt
atcgccatgggactcatcaaagaagatgataagattgttatcctttcggacatccttggt
gatgaggatcatctcggcgatatggattttaagatcgtcgggactgcagacgggattact
gcacttcagatggatatcaagattgatggtgttgatcgtgatattatgaagcaagcactt
tcgcaagcccaggaggggcgtattcatattcttggcgaaatggcaaaagggattaatgct
tcacgtgaagaagtggcccaacatgctccaaaatatttcagttacaaaattaacactgat
aagatccgtgatattatcggacctggtggcaagatcatcaaagagatgtctgccgagtat
gatgcaaccattgaagtcgacgattccggtcttgtgaagatgtttactaaggatggaagt
aaggcagatgcactgttgaggaaaattcaagagatgactgccacagctgaggtcggaaaa
gtatacaagggtatagtcaagaccattaaggatttcggtgcatttgttgagatcctgcct
ggaacagatggtctggtgcatatctcagaacttgccaatgaacgtgttggaaaggtgaca
gatgtggttaaagagggagatgagcttgaggtgaaagttcttgaggtcgattcccgcggt
cgtatccgtctgagccgcaaggcgttgctgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (35)   

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