KEGG   Dinoroseobacter shibae: Dshi_3681
Entry
Dshi_3681         CDS       T00612                                 
Symbol
thiC
Name
(GenBank) thiamine biosynthesis protein
  KO
K03147  phosphomethylpyrimidine synthase [EC:4.1.99.17]
Organism
dsh  Dinoroseobacter shibae
Pathway
dsh00730  Thiamine metabolism
dsh01100  Metabolic pathways
dsh01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00730 Thiamine metabolism
    Dshi_3681 (thiC)
Enzymes [BR:dsh01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.99  Other carbon-carbon lyases
    4.1.99.17  phosphomethylpyrimidine synthase
     Dshi_3681 (thiC)
SSDB
Motif
Pfam: ThiC_Rad_SAM ThiC-associated
Other DBs
NCBI-ProteinID: ABV95414
RoseoBase: Dshi_3681
UniProt: A8LT47
Position
pDSHI01:84592..86400
AA seq 602 aa
MKDLTPTVTTGPLPASRRVYQPGTLHPQIRVPMREIDLHPSAGEPPVTVYDSSGPYTDPS
AKIAINGGLPRLRADWIAARNDIELYEGRHVRPEDNGFAEGARLVPEFPVRHKPLQAKAG
RAVTQMAYARAGIITPEMEFVAIRENLGRKAAKEALVRDGQDWGAAIPDFVTPDFVREEV
ARGRAIIPANINHPEAEPMGIGRNFLVKINANIGNSAVTSSMEEEVEKMVWATRWGADTV
MDLSTGRNIHNIRDWIIRNSAVPIGTVPLYQALEKVEGIAEDLSWEVYRDTLIEQAEQGV
DYFTIHAGVRLHMIPMTIKRVTGIVSRGGSIMAKWCLHHHRESFLYEHFAEICEIARAYD
VSFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDCQVMIEGPGHVAMHKIKENM
DKQLEVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNR
DDVKIGVITYKIAAHAADLAKGHPGAQIRDDALSRARFEFRWEDQFNLSLDPETARSMHD
ETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKDGMAKMAEKFRKGGDLYVPLDKVK
EI
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgaaagatctgacaccaaccgttactactggacccttaccggcatcccggcgcgtttat
cagcccggaacgctgcatccccaaattcgcgtccctatgcgcgagattgatcttcaccct
tcggctggcgaaccgccggttacggtctatgacagctctggcccctatactgatcccagc
gctaaaatcgctatcaacggtggcctgccgcgcctgcgggcagactggatcgccgcacgc
aacgatatcgagctttatgagggtcgccatgtgcgtcccgaggataatggctttgctgag
ggtgcccggctggtgcccgaattcccggtccgccacaagccgttgcaagccaaggcagga
cgcgcggtcacgcagatggcctatgcccgcgccgggattataacacccgagatggaattt
gtcgccatccgcgagaaccttggccgtaaggccgcgaaagaggctctggtacgtgacggc
caggattggggcgcggccatccccgattttgtgactcccgatttcgtgcgcgaagaagtc
gccaggggccgtgcgatcatccccgccaatatcaaccaccccgaggccgagccgatgggg
atcgggcgtaattttctggtcaagattaacgcgaatatcggtaactccgccgtcacctcc
tcgatggaggaagaggtggaaaagatggtctgggccacacgttggggcgcggatacggtg
atggacttgtctacgggccgcaatattcacaacatccgcgactggatcatccgcaattct
gccgtacccatcggcaccgttccgctttatcaggcgctggaaaaggtcgagggtatcgcc
gaagacctaagctgggaggtgtaccgcgatacgctgatcgaacaggctgaacagggggtg
gattacttcaccattcatgctggcgtgcggctgcatatgatcccgatgacgataaagcgg
gtgaccgggattgtatcgcgcggcggctcgatcatggcgaaatggtgcctgcatcatcac
cgcgaaagtttcctttacgagcacttcgctgagatctgcgaaattgcccgggcatatgac
gtcagcttctctttgggggatgggttgcgtcccggctctatcgcggacgccaatgatgag
gcgcaattcgccgaactggagacgttgggcgaactgacgcagatcgcatggaagcatgac
tgtcaggtgatgatcgaaggaccgggccatgtagccatgcacaaaatcaaggagaatatg
gacaagcagctggaggtctgcggcgaggcgccgttttatacgctcgggccgcttaccacg
gatatcgcaccgggatatgaccacattaccagcggtattggtgcggcgatgataggctgg
ttcggcacggcgatgctttgctatgtcactcccaaagagcatctaggtctgcctaaccgt
gacgatgtgaagatcggtgtcatcacctacaagattgcggctcatgctgccgatctggcc
aaggggcatccgggagcgcagatccgagatgacgcgttgtcacgcgcgcggttcgagttc
cgctgggaggatcagttcaacctctcgcttgatcccgaaaccgcgcgctcgatgcatgac
gaaaccttgccgaaagaggcgcataaggtcgcgcatttctgctccatgtgcggaccgaag
ttctgctcgatgcggatcagccacgatatccgcgccgaggcgcagaaggacggcatggcg
aaaatggccgagaagttccgcaaaggcggtgatctttatgttcctcttgataaggtaaag
gaaatataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (7)   
   KEGG PATHWAY (3)   
   KEGG MODULE (4)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (31)   

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