KEGG   Dichomitus squalens: DICSQDRAFT_178966
Entry
DICSQDRAFT_178966 CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
dsq  Dichomitus squalens
Pathway
dsq03030  DNA replication
dsq03410  Base excision repair
dsq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DICSQDRAFT_178966
   03410 Base excision repair
    DICSQDRAFT_178966
   03420 Nucleotide excision repair
    DICSQDRAFT_178966
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dsq03032]
    DICSQDRAFT_178966
   03400 DNA repair and recombination proteins [BR:dsq03400]
    DICSQDRAFT_178966
Enzymes [BR:dsq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DICSQDRAFT_178966
DNA replication proteins [BR:dsq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    DICSQDRAFT_178966
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      DICSQDRAFT_178966
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 18840702
NCBI-ProteinID: XP_007363410
JGI: 178966
Position
Unknown
AA seq 2254 aa
MARGSGSFKRGGRGTSRFSYRGNTSFRGGRGRGRGRGGAPADAQPQRDEDGNQLAERFEQ
VKTNDEVDEKLGFARVAEGPTREGWLINMHPTLMKDADWPGGKAAVDFYFIQDDGGMFKC
TLQYEPYFYIACKSGMETVIEEWLLKKYEGIICRITRERKEDLQMPNHLMGHRRLFLQLH
FRNVSDLLTVRCDIMPLALANSAKLDAVDAYAEVVTATAAPTTNIELEGEWAADSQHAGS
STSAHAHARWGDKDPREGIVDIREYDVPYYLRVAMDNEIRVGLWYAISFVQGQPAFKLLT
ARVKRADPVVMAFDIETTKAPLKFPDQAIDQVMMISYMVDGQGYLITNREIVSEDIEDFE
YTPKEGYEGPFIVFNEPDEAATIRRWFSHIQEVKPTVMATFNGDFFDFPFLDARSKVHGI
DMFLESGFAKDSEDEYKSRGCVHMDCFRWVKRDSYLPQGSQGLKAVTTAKLGYDPIELDP
ELMTPYAMEQPQVLAQYSVSDAVATYYLYMKYVHPFIFSLCNIIPLCPDEVLRKGTGTLC
ETLLMVEAIRGQIIMPNRHEESHGTMYEGHLVASETYVGGHVEALEAGVFRSDIVTHFKI
EPSAVQQLIDQLDAALTFCIVEESKASLESVTNYDEVKAEIQAKLEEMRDNPQRMDSPLI
YHLDVAAMYPNIMLSNRLQPDSVVDEATCAVCDFNRPGKTCDRRMTWAWRGEYFPARRDE
YNMIKHALNQETFPPKKPGGPQRKFVDLSEAEQTALLHKRLGDYSRRVYKKIKDTKIENR
EAIICQRENPFYIDTVRRFRDRRYEYKGLHKTWKKNLDAYVGEHRSIAEVDEAKKMIVLY
DSLQLAHKCILNSFYGYVMRKGARWHSMEMAGITCLTGATIIQMARQLVEQIGRPLELDT
DGIWCMLPGVFPENFKFKLANGKAIAFSYPCTMLNHLVHAKFTNHQYHELDPETGEYKVH
SENSIFFELDGPYKAMILPSSKEEDKLLKKRYAVFNDDGSLAELKGFEVKRRGELQLIKI
FQSQIFEKFLLGTTLEECYAAVAEVADRWLNVLVSHAEDLSDDELVELIAENRSMSKTLS
EYGGQKSTSISTARRLAEFLGDQMVKDKGLACKFIISAKPMGAPVTERAVPVAIFSAEES
VKRTYLRKWLKDNSLTSFDLRSILDWDYYIERLGSVIQKLITIPAAMQKVANPVPRIHHP
DWLHRRVVAMEDKFRQHKVTDFFKRAGEGELAQTQSQREDDDVDMEDGMAQRPRGFRPMA
VVKRKPRREESAEAEESQFAELPRDPKQSYRSWLHVMRKRWSGRGVDNSDAATSLAVPAM
FRGVRQKQSTHWDIVQIRPNRTPGRFTLWLSINGSLTAVPLRIPREFYIHLRTPPKKDQF
NHELYQCQKVARSMPRDRPCVNLYKISVREDLYVEGHEHFIDITNDPNVDGVYELQLPLV
TRAILKLGKTCCNEDKSTNLTRAEAIGFDLQQLGRSNPSLTKRRYLDQGRAGKYIFLYHA
CAANAPVHVFALFIPGEVAKLHIVDPATRRQPIPRLSEHYADLLSKHEQNAGASHSYTYP
DHLSFTTTYHGNDATALKAISRELGLVENRSYIVVISSSKEQSYFDLHTPKLAKFPVLSM
SKAKSPHSLDVFPWQTSVAQKLINRYLSLGPWLDRTIAMADYYDVPVGHIEGDQPLLLAD
IEFARRLTSQDVILWWSPGDRPDLGGIEEDNRPQEELAKTEFKSPGCYSNVCLEIAVRNL
AVDAVLHSVIVNELEGSGGATAFDASRTLDEYSKGESMQDLTLGESNVSPHIFSILKGLV
KAWMVDKIQGNFESPATIAIDHFWRWISSTASNMYDTGIHRFVHGLMRKTFIQMLAEFKR
LGSHVVYADLSRILLVTSKPPGTAHAYATYITTAVTSHELFQHVYLHTERFYDFLIFMDE
ANYGAVVCENPLAIEPPEELAIEMRWNIQSFLPPAIQADFRAVVRYFLVEFFRTAQKSQG
ATRVPLRALQNGGAPDATPRDAAKVEELSACREFVSRKLTRRMLRVLGGVLDRHRDALTD
EDPSALAQWEFPILPGSHLPLSNPGLELVKFTCAVFALAKEYTLEVGLLKRNLLDLVGVR
EFASEAAFVNPCEPLKLSAVPCRHCDSMKDFDFCRDPVLLPSSSSSSGNASAHAQARWLC
TKCGGEYDRAGIEFALVRLVHELERRFAQQDLRCARCSQVRADNVSRHCGCSGAFVLTMN
KADVRRRLRTVVNVALAHGMGRLKECAQTLLNSW
NT seq 6765 nt   +upstreamnt  +downstreamnt
atggctcgaggttcgggctccttcaagaggggtggacgcggtacctctcgtttcagctat
cgaggcaatacatcgtttcggggtggtagaggccgcggtagaggccgcggaggggcacca
gctgatgcgcaaccacaacgagatgaggacggaaaccagcttgcggagcgttttgagcag
gtgaagacgaacgacgaggtggacgagaagctcggatttgcacgagtcgctgagggtccc
acaagagagggctggttgattaacatgcacccgacattgatgaaagacgcggactggcct
ggaggcaaagccgctgtcgacttctacttcatccaggacgacggaggaatgttcaaatgc
acgcttcaatacgagccgtacttttacatagcgtgcaagagcgggatggagacagttatc
gaagaatggctcctgaagaaatacgaaggcatcatctgccgcatcacccgcgagcgcaaa
gaggacctccagatgccgaaccacctcatgggccaccgccgcctcttcctccagctccac
ttccgcaacgtctccgacctcctcaccgtccgctgcgacatcatgcccctcgcgctcgcc
aactcggccaagctcgacgccgtggacgcctacgccgaggtcgttaccgccaccgccgct
cccacgactaacatcgagctcgagggcgagtgggcggcggactcccagcacgcgggctcc
tcgacgagtgcgcacgctcatgcacggtggggcgacaaggacccgcgcgagggcatcgtc
gacattcgcgagtacgacgtgccgtactacctgcgcgtcgcgatggacaacgagatccgc
gtcgggctctggtacgcgatatcgttcgtgcagggccagccggcgttcaagctgctcacg
gcgcgggtgaagcgtgcggacccggtggtgatggcgttcgatatcgagacgacgaaggcg
ccgctgaagtttccggaccaggcgatcgaccaagtgatgatgatctcgtacatggtcgac
gggcagggatacttgattaccaatagggagatcgtaagcgaggatatcgaagactttgag
tacaccccgaaggaggggtacgaaggtccgtttatagtgtttaacgagccggacgaggct
gcgacgatccgccggtggttctcgcacatccaggaggtgaagccgacggtgatggcgacg
ttcaacggcgacttcttcgacttcccgttccttgacgcgcgctcgaaggtccacgggatc
gacatgttcctcgagtctggcttcgcgaaggactcggaggacgagtacaagagcagggga
tgcgtgcatatggactgcttccggtgggtgaagcgcgattcgtacctcccgcaaggcagc
cagggcttgaaggcggtgacgacggcgaagctggggtacgaccctatcgagctcgacccc
gagttgatgacgccgtacgcgatggagcagccgcaggtgctcgcgcagtactccgtctcc
gatgcggtggcgacatactatctctacatgaaatacgtgcacccgttcatcttctccctt
tgcaacatcattccgctctgcccggacgaggtcttgcggaaaggcactgggacgctttgt
gagacgcttctcatggtggaagcgatccgagggcagattatcatgccgaaccggcatgag
gagtctcacgggacgatgtatgaaggacatctggtcgcgtcggagacgtatgtaggaggc
cacgtcgaggctctggaggcgggcgtgttccgaagtgacattgtgacacacttcaagatc
gagccgtctgccgtgcagcagctcatcgaccagctggacgcggcgctcacgttctgtatc
gtcgaagagtcgaaggcatcgctcgagtcggtgacgaactacgacgaggtcaaggcggag
atccaggccaagcttgaagagatgcgcgataacccgcagcgcatggacagtccgctcatc
taccacttggacgtcgcggcgatgtacccgaacatcatgttgtcgaatcgactgcagccc
gactcggtggtcgacgaggcgacgtgcgcggtctgcgacttcaaccggccgggcaagacc
tgcgaccgccggatgacgtgggcgtggcgtggggagtacttccctgcgcgcagagacgag
tataacatgatcaagcacgcactgaaccaggagacgtttccccctaagaagcccgggggt
ccgcaacgcaagtttgtcgacctttctgaggcggagcagacggcgctgctgcacaagcgc
ttgggggactactcaaggcgtgtgtacaaaaagatcaaggacacgaagatagagaacagg
gaggcgatcatctgccagagggagaatccgttctacatcgacacggtgcgccggttccgg
gaccggcgttacgagtacaagggcctgcacaagacgtggaaaaagaatctggacgcatac
gtgggggagcaccggtcgattgcggaggtggacgaggcgaagaagatgatcgtgttgtac
gactcgctgcagctggcgcacaagtgtatcctgaactcgttttacggctacgtgatgcgc
aagggcgcgcgctggcactcgatggagatggcgggcataacgtgtctgactggggcgacg
atcatccagatggcgcggcagctcgtcgagcagattggtcggccgctggagctggacacg
gacgggatctggtgcatgctgcccggggtgtttccggagaacttcaagttcaagctcgcg
aacgggaaggcgatcgcgttctcatacccgtgcacgatgctcaaccacctcgtccatgcg
aagttcacgaaccaccagtaccacgaactggaccccgagacgggcgaatataaggtgcac
tcggaaaactcgatcttcttcgagctggacgggccgtacaaggcgatgatcttgccgtcg
tcgaaggaggaggacaagctgctgaagaagcggtatgcggtgttcaacgacgacggttcg
ctcgcggagctgaaggggttcgaggtgaagcggcggggtgaactccagctgatcaagatc
ttccagagccagattttcgagaagttcctgctgggcacgactctcgaggagtgctatgcg
gcggtcgcggaagtggcagaccgctggctcaacgtcctcgtctcccacgcggaggacctc
tcggacgacgagctcgtggagctaatcgcggagaaccggtccatgtcgaagacgctctcc
gagtacgggggccagaagtcgacgtcgatcagcacggcgcggcgcctcgccgagttcttg
ggtgaccagatggtcaaggataagggactggcgtgcaagttcatcatctctgcgaagccg
atgggggccccagtcactgaacgcgcggtgcctgtcgcgatcttctcggcggaggagagc
gtgaagcggacgtatctgcgcaagtggctaaaggacaactcgcttacgagcttcgatctg
cgctcgatcctcgactgggactactacattgagcgcctgggctcggtcatccagaagctc
atcacgattcccgctgcgatgcagaaggtcgcgaacccggtcccgcgcatccaccacccg
gactggctccaccgccgcgttgtcgcgatggaggacaagttccgccaacataaggtgacg
gacttcttcaagcgtgcgggggagggtgagttggcgcagacgcaatctcaaagggaggac
gacgacgtcgatatggaggatggcatggcccagcgcccgcgtggtttccgccctatggcg
gtcgtgaagcgtaagccgcgaagagaggaaagcgcagaggcggaagagtcacagtttgcg
gagttaccccgcgacccgaaacagtcctaccgctcctggctgcacgtcatgaggaaacgg
tggtcaggtcgtggggtcgacaactcggacgctgctacaagcctcgccgtgcccgcaatg
ttccgtggggtccgtcagaagcagagcacgcactgggacatcgtacagatccgccctaat
aggacgccaggacggttcacgttgtggctctcgatcaatgggtcgctcacggccgtccca
cttagaattccccgagagttctacatccaccttcggactccacccaagaaggatcagttc
aaccatgagctgtaccagtgccagaaggttgccaggagcatgccgcgagaccggccgtgc
gtcaacctctacaagatctctgtgcgggaggatctgtacgtcgaggggcacgaacacttc
atcgacatcaccaacgacccgaacgtggatggcgtttatgagctgcagttgccactagtc
acgcgcgcgattctgaagctgggcaagacatgttgtaatgaggacaagtccacgaacctc
actcgcgccgaggcaatcggttttgatctccagcagctaggtcgttcgaacccctctctg
acgaagaggagataccttgatcaaggtcgcgctgggaagtatatcttcttataccacgcg
tgcgctgcgaatgcacctgtgcacgtctttgctctcttcatacccggcgaagtcgccaaa
ctgcacatagtcgaccctgcgacacgtcgacaacccatacctcgtctctccgaacactat
gctgatctgctgagcaagcacgagcaaaacgcaggcgcaagccactcatacacctaccct
gatcatctttctttcactaccacttaccacgggaacgatgccacggcgctcaaggcgatc
tcccgcgagctgggtctcgtcgagaaccggtcatacatcgtagtcatctcctcgagtaag
gagcagagctattttgacttacatactcccaagctcgcgaagttcccggttctctcgatg
tcgaaagcaaaatcaccgcactccttggatgtcttcccctggcaaacgagcgtagcgcag
aagctcatcaaccgctacctatccctgggaccttggctggaccggaccatcgcgatggca
gactattacgacgtgcccgtcgggcatatcgagggtgaccagcccctcttactagccgat
atcgagttcgcccgcaggctgacgagccaagatgtcattctctggtggtcacctggtgat
cgtcctgacctaggtggcatcgaagaggacaaccgtccgcaagaagagctggcgaaaact
gaattcaagtcgccagggtgctactcaaatgtctgcctcgagatcgctgtccgcaacttg
gccgtcgatgcggtcttgcactcggtcatcgtgaacgagttggaaggcagcggcggtgct
acggcctttgacgcgtctcggacattggacgagtactccaagggcgagtccatgcaggat
ctcacgcttggagaatccaacgtttctccacacatcttcagcattctcaagggcttggtc
aaagcttggatggtggataagatccagggcaatttcgagagccccgccacgatcgcgatc
gaccacttctggaggtggatcagctcgacggcgtcgaacatgtacgacacgggcatccac
cggtttgtccatggcctcatgcgcaagacattcattcagatgctcgccgagttcaagcgc
ctcggatcgcacgttgtctacgcggacctgagccggatccttctcgtcacgtccaaacct
cccggtaccgcgcacgcctatgccacgtacatcacgacagccgtgacttcgcacgagctc
ttccaacatgtctacctccacactgagcgcttctacgacttcctcatcttcatggacgaa
gcaaattacggcgccgtcgtttgcgaaaatcctcttgccatcgagccccccgaagagctc
gcgatcgagatgcgttggaacattcagtccttccttccccccgccatccaggccgacttc
cgcgccgttgtccggtacttcctcgtcgagttcttccgcaccgcacaaaagagccagggc
gcgacccgcgtgccccttcgtgcgctccaaaatgggggcgccccagacgcaacgccccgc
gacgccgccaaggtcgaggaactctccgcatgccgggagttcgtctcccgcaagctcact
cggcgcatgctccgcgtactcggtggcgttctcgacaggcaccgcgatgcactcacagac
gaagacccgtccgcgctcgcgcagtgggagttccccatcctcccaggatcgcacctgccc
ttaagcaaccctgggctggagctggtcaagttcacttgtgcggtattcgcgctcgcgaag
gagtacacgctcgaagtggggctgctgaagcgcaacctgctcgacctcgtcggcgtgcgc
gagttcgcgtccgaggccgcgttcgtcaacccgtgcgagccgctcaagctctcggccgtg
ccgtgccgccactgcgacagcatgaaggacttcgacttctgccgcgaccccgtcctcctc
ccctcttcttcctcctcctccggcaacgcgagcgcgcacgcacaagcgcggtggctctgc
acgaagtgcggcggggagtacgaccgggcgggcatcgagttcgcgctggtgcggctcgtg
cacgagctcgagcggcggttcgcgcagcaggacctgcggtgcgcgcggtgcagccaggtg
cgggcggacaacgtgtcgcggcactgcgggtgctcgggcgcgttcgtgctcacgatgaac
aaggcggacgtccggaggaggctgagaacggtcgtgaacgtcgcgctcgcgcatgggatg
gggaggctgaaggagtgtgcgcagacgctgctcaacagctggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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