KEGG   Dichomitus squalens: DICSQDRAFT_58947
Entry
DICSQDRAFT_58947  CDS       T03133                                 
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
dsq  Dichomitus squalens
Pathway
dsq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DICSQDRAFT_58947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsq03021]
    DICSQDRAFT_58947
Enzymes [BR:dsq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DICSQDRAFT_58947
Transcription machinery [BR:dsq03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     DICSQDRAFT_58947
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpa2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7
Other DBs
NCBI-GeneID: 18842848
NCBI-ProteinID: XP_007364943
JGI: 58947
UniProt: R7T1L0
Position
Unknown
AA seq 1230 aa
MPDGSARTPKRPNSSFNTLEREKNFKSPPKDAAVVPILNEFVTPHIESFNALFNDSGLPA
GDGDGRGLLSLGLEDIGRRVVFDGKGDIGAESGQRGWGNRLTMWYEQVTVARPMVPEKDK
DAVERRVFPTEARERLTSYRGRMTAKICWQVNDGPVEVQMRDCGLLPIMVRSARCNVRGM
SSADLVKHHEEPEEFGGYFIINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQ
IRCVRPDQTGVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEIFEGVMMQ
DYEDTFLSDRVELLLRSFKMYSLYTGDQCLQYLGDKFRVVVNMPEDWTNQAIGVWLINKV
VLVHLQNPRDKFRMLLFMLRKLFALVSKSCSVDNPDSPQHQEVLLPGTLYGMIIKERLEE
ALNSFREGIALDVRNSNPAVDFFDKRYIKKVLSRTSYDIGAKMSNFLATGNLVSPTGLDL
QQASGFTIVAEKLNWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSP
CGLLNHLSRTCRIVTSPLAVAHLPALLAAHGMTQAFAPSVDGRRNLCVQLDGRLIGWAPS
AVCKQLATSLRIWKTEGKHSVPLDLEIGFVPVSKGGQYPGLYLFSSRSRMMRPVKYLANG
RDDQVGSFEQVYMDIACTPAEIEDGVSTHVEHAPTNFLSILANLTPFSDFNQSPRNIYQC
QMGKQTMGTPATALQHRTDNKLYRLQTGQTPVVRPALHNTYGMDSFPNGTNAIVAVISYT
GYDMEDAMILNKSAHERGFGYGTVYKAYTVDLQELTGSRRQTGPPTLHFGVGPEIRMEEG
PNQHAAAKLVDADGLPIVGSRLNPGDPIAAYVDDTTGRTKFVKYKGDEVAYVDTVRLLGS
DAGDQELQKINITLRITRAPVIGDKFSSRHGQKGVCSQKWPAIDMPFTESGMQPDVIINP
HAFPSRMTIGMLVESMAGKAGAMHGLAQDATPFQFTEEDTAIDYFGEQLVAAGYNYYGNE
PMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTIGPVDPVTRQPVKGRKRAGGIRF
GEMERDALIAHGTAFLLQDRLMNCSDYSTAWVCRTCGSLISLGYDDVTLGEMVIGASGML
KPTGPGGEYCRVCRAAAEEEETRARQALATGQASATANGHADVRVQIPSQHILGPASKGG
DMDIIAVPYVFRYLCAELASMGIKVSLEVR
NT seq 3693 nt   +upstreamnt  +downstreamnt
atgccagatggctctgctcgcacgcccaagcggcctaatagctcattcaacacactagag
cgcgagaagaacttcaagagcccacctaaggatgctgcggtcgtcccgatcttgaatgaa
ttcgtgaccccgcacatagagtccttcaatgcgttattcaatgactccggacttcctgca
ggtgacggagacgggaggggacttctatcattggggctggaggacattggaaggcgggta
gtgtttgatgggaagggagatatcggagcagaaagtgggcagagaggatgggggaaccgg
ttgaccatgtggtatgaacaggttactgttgcgcgacctatggttcctgagaaagacaaa
gatgctgttgagaggagagtattcccaacggaagctcgcgaacggttgacatcatatcgc
gggcgtatgactgccaaaatatgctggcaagtgaacgacggtcccgttgaagtccagatg
agggattgcggtcttctgcctattatggtcaggtcagcacggtgtaacgttcgcggtatg
tcttccgcggaccttgtaaagcatcacgaggagcccgaagagttcggcgggtacttcatc
atcaatgggaatgaacgtctcatccgttacctcatcctccctcgtcgacaccacgtcatc
tccctcgtccgaccctcgttcgtcaaccgcggtccatcctacaccccttacgccgtccag
atacgctgcgtccgccctgaccagacgggcgtcacgaacacactccactacctctcgaac
ggtagcgcgatgctcaggttctcctggcgcaaacaagaatatgtcattcccatcatgcta
atcctcaaagctctcgtttccgcgtccgataaggagattttcgagggcgttatgatgcaa
gactacgaggacacattcctatcagatcgtgtcgagctgttactcaggagtttcaagatg
tacagcttgtacacgggagatcaatgtctgcagtacttgggtgacaagttccgcgtggta
gtcaacatgcccgaagactggactaaccaggccattggcgtatggctcatcaataaagtc
gtactcgtccatctgcaaaacccaagagacaagttccgcatgctccttttcatgctgagg
aagctctttgcactcgtctccaagtcatgtagcgtcgacaaccccgattctcctcaacac
caggaagtcctcctacctggtacactctacggcatgatcatcaaagagcgtctcgaggaa
gccctcaacagcttccgcgagggcattgcacttgacgttcgcaactcaaatcctgctgtg
gacttcttcgacaagcggtatatcaagaaggtgctcagcaggacgagctacgatatcggc
gccaagatgtccaacttcctcgccaccggcaacctcgtatctccgacgggccttgacctc
cagcaagcgtccggtttcacgatcgtcgccgagaagctcaactggatgcgttatataagc
cacttccgctccatccaccgtggtgccttctttgccgagctcaagaccacgaccgtccga
aagctccttcccgaagcgtggggcttcctctgccctgtgcacacgccggacggctcgccc
tgcggtctgctcaaccatctctcccgcacatgccgcatcgtcacctctcccttagccgtc
gcacaccttcccgcactgctggcagcacacggcatgacgcaggcgttcgcgccttcggtt
gatggccggcgcaacctctgcgtgcagctcgatggacgactcatcggctgggccccatcc
gcggtatgcaagcagctcgcgacgagcctgcgaatatggaagaccgaaggcaagcacagc
gtcccgctcgacctcgaaatcggcttcgtgcctgtatctaagggcgggcagtaccctggc
ttgtatctgttctcgagccggtctaggatgatgcggcctgtgaagtatttggcgaacggg
agggacgaccaggtgggatcgttcgagcaagtgtatatggacatcgcgtgcacgcctgcg
gagattgaggacggggtgtcgacacatgtggaacacgcgcccacgaacttcttgtctatt
ctcgcgaacttgacaccgttctcggacttcaaccagagtcctcgtaacatctatcaatgt
cagatgggtaaacaaacaatgggaacgcctgcgacggccctccagcatcgcaccgacaac
aagctctaccggctccaaaccggccaaacgcccgtcgtgcgccccgcactgcacaacacg
tacggtatggactcgttcccgaacggcacgaacgcgattgttgccgtcatctcctacacc
ggctacgacatggaggacgcgatgatcctcaacaagtccgcacacgagcgcgggttcggt
tacgggacagtttacaaggcatacaccgtcgacctgcaggagctcacgggctctaggagg
cagaccggccccccaacgctacattttggagtgggcccggagatcagaatggaagagggc
cccaatcagcatgcggcggcgaagctggttgacgcagatggtttgcctattgttgggtca
aggctgaaccctggggacccgattgcggcgtatgtggacgacacgactggacgcacgaag
ttcgtcaagtacaagggcgacgaggtcgcgtatgtcgacacggtccgcctgctaggcagc
gacgccggtgaccaagagctgcagaagatcaatatcaccctgcgcatcacccgcgcgccg
gttatcggcgacaagttctcatcgcggcacgggcaaaagggtgtctgctcgcaaaaatgg
cccgccatcgacatgccgttcactgagagtggcatgcagcccgacgtcattatcaacccg
cacgctttcccgtcccgcatgacgattggtatgttagtcgagagcatggctgggaaagct
ggtgcaatgcacggtcttgcgcaggacgcgacgcccttccagttcacggaagaagacact
gcgatcgactacttcggcgaacagctcgtcgcggcgggctacaactactacgggaatgag
ccgatgtactccggcatcaccggtcaggagttcgcggcggacatctacatcggtgttgtc
tactaccagcgccttcgacacatggtcctcgacaagttccaggtgcgaacaataggcccc
gtcgatcccgttacccgtcagcccgtcaagggccggaaacgcgcgggtggtattcgtttc
ggagagatggagcgggacgcgctcatcgctcatgggaccgcattccttttgcaagaccga
ctcatgaactgctccgactattcgacggcatgggtgtgcaggacttgcggcagcttgatc
tcgctcgggtacgacgatgtcaccctcggcgagatggtaatcggcgcgtcgggcatgctc
aagcccacaggacctggcggtgagtactgtagagtatgccgtgctgctgcggaagaagag
gagacacgcgcaaggcaagccttggcaaccgggcaggcatcagctactgccaacgggcac
gccgatgtgcgcgtgcagataccatcgcagcacattcttggaccggcctcgaagggaggc
gacatggacatcattgccgtaccttacgtcttcagatacctgtgtgccgaactcgcatcc
atgggtatcaaggtgtcattagaggtccggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system