KEGG   Dichomitus squalens: DICSQDRAFT_59413
Entry
DICSQDRAFT_59413  CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dsq  Dichomitus squalens
Pathway
dsq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DICSQDRAFT_59413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_59413
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     DICSQDRAFT_59413
SSDB
Motif
Pfam: DNA_pol_A_exo1 PMC2NT HRDC
Other DBs
NCBI-GeneID: 18842887
NCBI-ProteinID: XP_007365353
JGI: 59413
UniProt: R7T1F9
Position
Unknown
AA seq 861 aa
MSLSSDLSSSSFNDYNGRLQGSALKATHAAVSLPADIPFHRSIHPEFAKRLDQCSARVLS
LTNKLLTLSTTANAANTSRGKGKARLETQDDVVDNFHSMVVDAMDQLLENADIGIDQFLG
NLKVPAIAVNPTPATAQKVWVQGRLDPALQHASYLAKPQLSFKRKVNNNRHTAWTPTLKH
KYNAQVPLGYNLGEEGEEPSTSLHPYRYEIRHIAYPSRMFTSAPPISPRSFEETPFSWVS
TPEDFATMLDKLRPASEIAIDLEYHNYRTFSGFVCLMQISTRDEDFVVDTLALREELEEL
NEVFTDPNIVKVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLDFPRHGLASLLEMYCD
FTADKRYQLADWRIRPLPKEMLQYARSDTHFLLFIYDNLRNALLDRAQSRAQSRAQSPSS
PTSTPPPDPSIPPAHVLVREVLSRSEETALRVYEKEIYDAEFGLGPGGWDTMARKWNKTL
LIGSMAETNTGAAVNVQRAVYRAVHAWRDKIAREEDESTRYVLPNHYIFSLAERTPADMA
ALLSVFHPVPSVIRRRAKELLDAIRDAVKGALGSGSTTERGAEVTASVEGEEIMSVDDPL
TTVVTATSMASTVSPASLWVNGELIENTYRSTLCSRLDEASSITASSSTLFGPSLLRNAA
TTLPITSRSSLLGGKSDAVSLSQRIAPHKTRFLEAASRIHSALVIAPTVPKIVSVNSETS
VTPIVSTPDDPDVLKNDGVEELPFVPASQRKRDAEPVDDTIVVVGQPKRKKRKGVTEKAT
NASDSGATQDTSPMEEVEAFDYASAPNILDDGSDYERANASGAKKKQKRAKGSNAAYYGN
FGAAPKAHSQPKSGNQSRTFR
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgtccttatcatccgatctatcgtcctcgtctttcaacgattataacggccggctgcag
ggctcggctctcaaggcgacacacgcggctgtttcactgcctgctgacatccccttccac
cgttccattcacccggaatttgcgaaacgactagaccaatgttctgctcgggtgctatct
ctcacgaacaagctcctgaccttgtctaccactgcaaatgcagctaacacctcccgcggg
aagggcaaggcgcgattagaaacacaggacgatgttgtagacaacttccactcaatggtc
gtggatgctatggaccagttgcttgaaaacgcggatattggcatagatcaattccttggt
aatctcaaagtccccgcgattgcggtgaatccgactcccgcaaccgctcagaaagtatgg
gttcagggacgtctcgatccggcgttacaacacgcgtcgtaccttgcaaagccgcagctc
tccttcaagaggaaagtcaacaacaaccgtcacacggcgtggactcctaccttgaagcat
aagtataatgctcaagtccccctcggatacaaccttggagaggaaggagaagagccttca
acatcgctacatccctaccgctacgaaatcaggcatatagcctacccttcgcgcatgttc
acgtcagcgccacctatctcgccacgctctttcgaggagactccattctcttgggtatca
actccagaagatttcgcgacgatgcttgacaagctccgtcccgcgagtgagatcgcgatc
gacttggagtaccataactatcgcacattcagtggcttcgtgtgtctgatgcaaatcagc
acccgcgatgaggactttgtggtcgatacgctcgctctgagggaagagctggaggaactg
aacgaagtgttcacggatcccaatattgtcaaggtgctacatggcgccgaaagcgatatc
gtatggcttcagcaagatttcaacctctacatcgtcaacctcttcgatacgtaccacgca
tccaaagtactagactttcccaggcacggcctcgcgagcttgctggagatgtactgcgac
ttcactgcggacaagcgatatcaacttgcggactggcgcatacggccattaccgaaggaa
atgctccagtatgcccgctcggatactcatttcctcctgttcatctatgataacctccgc
aatgctctcctcgaccgcgctcagtctcgtgcccagtcccgcgcacagagcccatcatct
cctacgtcaaccccaccaccggatccctcgatccctcctgcacacgtacttgtccgagag
gtactgtcacgttcggaagagaccgcgttgcgggtctacgagaaggagatctacgatgct
gagtttggtttgggcccaggcgggtgggatacgatggcgcgcaagtggaacaagacattg
cttatcgggagcatggcggaaacaaacacgggtgctgctgtgaacgttcagcgcgctgtc
taccgtgcagtgcatgcatggcgggataagatcgctcgcgaagaggacgagagcacacga
tatgttctgccgaaccattacatcttctcgctcgcggagcggacacctgctgacatggcg
gcgctactctctgtgttccatcctgtgccatcggttatccgacggcgagccaaggaattg
ctggacgcgatccgggacgctgtcaaaggggcgctgggctccggtagcacaacggaacgc
ggcgcagaagtgactgcgagtgtagagggtgaggaaattatgtcagtcgacgaccctttg
acgacggttgttacggctacgagcatggcgtcgaccgtatctccggcttccctgtgggtg
aatggtgagctaattgagaacacgtataggtcgaccctatgctcacgtcttgatgaagcg
tcctccataacagcttcgtcatctacgctattcggaccttcgctgctacggaatgccgcg
acgacactacccatcacgtcgcgtagctcacttctaggcggaaagtctgatgctgtctct
ctatcccaacggatcgcacctcacaagacgcgcttcctcgaggccgccagtcgtatacac
agcgcactcgtcatcgcgcccacagtgcccaagatcgtatctgtcaattcggagacgagt
gtgacgcccattgtgtccaccccagacgatccagacgtgctcaagaatgacggggtggaa
gaacttccgttcgtccctgcatctcagcggaaacgggacgcggaacctgtcgacgacacg
atagtggttgttggccagcctaagcggaagaagaggaagggcgtcacagaaaaagctacg
aacgcgtccgactccggggctacacaagacaccagtcccatggaggaggttgaagcgttc
gactacgcatctgcaccgaacattttggacgatggctcggactacgagcgcgcgaatgcc
tctggcgcgaaaaagaagcaaaagcgcgccaaggggtcgaacgcggcttattacggcaac
ttcggcgcggcaccgaaggcgcacagccaacccaagagcgggaaccaatcgcggacgttc
cgatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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