KEGG   Candidatus Desulfovibrio trichonymphae: RSDT_0302
Entry
RSDT_0302         CDS       T05578                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dtr  Candidatus Desulfovibrio trichonymphae
Pathway
dtr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RSDT_0302 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dtr03021]
    RSDT_0302 (rho)
   03019 Messenger RNA biogenesis [BR:dtr03019]
    RSDT_0302 (rho)
Transcription machinery [BR:dtr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RSDT_0302 (rho)
Messenger RNA biogenesis [BR:dtr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RSDT_0302 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_22 ATPase_2 AAA OB_RNB Spore_III_AA AAA_14 AAA_25 HHH_4
Other DBs
NCBI-ProteinID: BAV91814
UniProt: A0A1J1DXK2
Position
complement(396759..398051)
AA seq 430 aa
MRKKTSPAILTDSVMSLTDLKTRSMQELMELAEQFEIENASSMRKQELIFALLSTCASQN
GAIYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVSPSQIRRFSLRKGDIVSGQIRPPKE
GERYFALLKVTEIGFEPPEHAKNLVLFDNLTPIYPDQQLIMENGDKNLSNRVIDIMAPVG
CGQRGLIVAPPRTGKTILLQSLANAINANNPDVYLIVLLIDERPEEVTDMERTVKKAEVI
SSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSGG
LDTNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDRH
LSEKRVFPAIDINRTGTRKEDLLLPEDVLNRVWILRKILAPMSSIDSMEFFLDKMRSTKS
NKDFMNAMGK
NT seq 1293 nt   +upstreamnt  +downstreamnt
gtgagaaaaaaaacatctccagccattttgacagacagcgtcatgagtctcacagatctc
aaaacacgcagcatgcaagagctgatggagcttgctgaacagtttgagattgaaaacgcc
agttccatgcgtaagcaggaattgatttttgccctactctcgacctgtgcttcgcaaaac
ggcgctatttacggcgatggcgttctggaaattcttcccgacggtttcggctttttgcgt
tcgccgttgtgcagctatatgcctgggcctgacgatatttacgtttctccttcacaaata
cgccgtttctccttacgcaaaggcgacattgtttctggccagatacgcccccccaaagaa
ggggaacgctattttgctctgctcaaagtcacggaaatcggctttgagccgccggaacac
gcaaaaaatcttgtcctttttgacaatcttacgcctatataccctgaccagcagctcatt
atggaaaacggcgataaaaatctctccaaccgcgttattgacatcatggcgcccgtcggc
tgtggtcagcgcggactgattgtagcaccgccgcgaaccggcaaaaccattctgctccag
tcgcttgccaacgcaatcaacgctaacaatcctgacgtctacctcattgtactgcttatt
gacgagcgtcctgaagaagtcacggatatggaacgcacggttaaaaaggcggaagtcatc
agctccacctttgacgaaccgccacagcgacacgtgcaggtttgtgaaatggtgctggaa
aaagcaaaacgccttgtggagcgcaagcgcgatgtggttattctgcttgactccattact
cgcctcggccgcgcctataatgcggtaacaccttcgtcgggccgtgtcctctcagggggt
ctggacaccaatgccctgcaacgacccaaacggtttttcggcgcggcgcgcaatattgaa
gagggcgggagtctgacaattatagcgacagcgctgattgatacaggttcgcgcatggac
gaagtgatttttgaggaattcaaaggtaccggcaatatggaaatctatctggatcgtcat
ctttctgaaaaacgcgtgttccccgccattgacatcaatcgtaccggcacacgcaaggaa
gacctgctcctgccggaggatgtgctcaatcgcgtctggattttgcgcaaaattctggcc
cccatgtcatccattgacagcatggagttttttctggacaaaatgcggagcacaaaatcc
aataaagattttatgaacgctatgggcaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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