KEGG   Nitratidesulfovibrio vulgaris DP4: Dvul_0179
Entry
Dvul_0179         CDS       T00452                                 
Name
(GenBank) ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
dvl  Nitratidesulfovibrio vulgaris DP4
Brite
KEGG Orthology (KO) [BR:dvl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dvl03016]
    Dvul_0179
Enzymes [BR:dvl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Dvul_0179
Transfer RNA biogenesis [BR:dvl03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Dvul_0179
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: ABM27203
UniProt: A0A0H3A5B1
Position
complement(218125..220221)
AA seq 698 aa
MATPSGIVRFPGAGCVVEFMQGNRPQIAWVMEEQGGRLRLFLPNRRETKLAAARLLPWAG
PRYDGERSRDDMVALLEEHRQRRDTREADIQPLELWEMVQGEVEQASVEWFAELLGETPG
VDEVAAMGRALLGCKTHFKFHPPDFEVYDAAKVEARMVEMEAARVREALVEAGQAFIKVL
WDVHCRRRTMPLPSSSEMPPAEVAERLATLLRTRMADPDDHDSDSVWKQVTKGLPDDAHM
PLHLAAAWGIVPVHHNFWMDRAGYAPGDEWAIDHVDEIDALMKRVEALREPLVDGTFISI
DSSTTRDIDDAFDISPSPEGGWILRLVLASPVTGWDFDGPLDRAVLRRATSIYLPERSHH
MMPETLGTDAYSLLAGQDRPALLVTFDIAADGSLRSTTPATGWVRLAANLTYTECEACLT
GEGDAGRAAPHADRLALADALARVRQQLRVAAGAVIIERDDPKVTLEGEGCAVKVHVAPP
DETPRAQLLVSEMMILANAAIASWGAERGITLLHRTQDVGIPREYAGVWNQPHDIARVVK
ALAPAHLEPVAKPHAGIAVPAYSPVTSPLRRYPDLVNEAQVIHYLTHGTPRWSREEVEAM
LPLLGARLDAAGQVQRFRPRYWKLFYIRQQGDKTWHEAVVTEENDAFVTISLPEVQIFVR
GRRSTFGDKVYPGQHFNVRLGKVHPLNNEIQIVDAMEG
NT seq 2097 nt   +upstreamnt  +downstreamnt
atggcgacaccttcgggcatcgtgcgttttcccggcgctggctgcgtcgtggagttcatg
cagggcaaccgcccccagatagcgtgggtcatggaggaacagggcggccgcctgcgcctg
ttcctgcccaaccggcgcgagacgaagctcgccgcggcgaggcttctgccatgggcaggg
ccgcgttacgatggcgaacgctcgcgtgacgacatggtggcgctgctcgaagagcaccgc
cagcggcgcgacacccgcgaagccgacatccagcccctcgaattgtgggagatggtacag
ggcgaagtggaacaggcgtccgtggaatggttcgccgaactcctgggcgagactccgggc
gtcgacgaggtggccgccatgggccgggcactgctcggttgcaagacgcacttcaagttc
cacccgccggacttcgaggtctacgacgccgccaaggtcgaagcgcgcatggtcgagatg
gaggccgcgcgagtgcgtgaagccctcgtcgaagccggacaggccttcatcaaggtgctg
tgggacgtgcattgccgccgccgcaccatgccgctgccctcgtcttccgagatgcccccc
gccgaagtggcggaacgtctcgccacgctgctgcgcacccgcatggccgacccagacgac
catgacagcgattcggtctggaagcaggtcaccaagggcctgcccgacgacgcgcacatg
ccgctgcaccttgccgccgcatggggcatcgtgccagtccaccacaacttctggatggac
agggcaggctatgcccccggcgacgagtgggccatcgaccacgtggacgaaatcgacgca
ctcatgaagcgcgtcgaagcgctgcgcgaaccactcgtggacggcacgttcatcagcatc
gactcgtccaccacccgcgacatcgacgacgccttcgacatctcgccctctcccgaggga
gggtggatactgcgcctcgtgctggcgtcccccgtcacagggtgggacttcgacgggccg
ctggacagggccgtcctgcgccgtgccaccagcatctacctgcccgaaaggtcgcatcac
atgatgccggagacgctggggacagacgcctacagccttctcgcaggtcaggacagaccc
gcactgctggtcaccttcgacatcgcggccgacgggtcactccgttccaccacccccgcc
accgggtgggtgcgcctcgccgccaacctcacctacaccgaatgtgaggcctgcctcacc
ggagagggcgatgcaggtcgcgccgccccgcacgccgaccgcctcgcgctggcggatgcg
ctggcgagagtgcggcagcagttgcgcgtggctgccggtgccgtgatcatcgaacgcgac
gaccccaaggtcaccctcgaaggcgagggctgcgccgtgaaggtgcatgtggccccgccc
gacgagaccccgcgcgcgcagcttctcgtctcggagatgatgatccttgccaacgccgcc
atcgcctcatggggtgcggaacgtggcatcactctcctccaccgcacgcaggacgtgggc
atcccgcgcgaatatgccggggtatggaaccagccgcacgacatcgcacgggtggtcaag
gcactggcccctgcccacctcgaacccgttgccaagccccacgcgggtatcgccgtgccc
gcctacagtcccgtgacctcgccgttgcggcgctaccccgaccttgtcaacgaggcgcag
gtcatccattatctgacccacggcaccccgcgctggtcgcgtgaagaggtggaggccatg
ctgccgcttctcggtgcgcgtcttgatgccgcggggcaggtgcaacgcttccgcccccgc
tactggaagctcttctacatccggcagcagggtgacaagacatggcacgaggccgtggtc
accgaagagaacgacgccttcgtcaccatcagcctgcctgaagtgcagattttcgtgcgg
ggcagacggtccaccttcggcgacaaggtctatccgggccagcatttcaatgtacgactc
ggcaaggtgcatccgctcaacaacgagattcagatagtggacgccatggaaggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

Download RDF
DBGET integrated database retrieval system