KEGG   Deinococcus wulumuqiensis: DVJ83_04045
Entry
DVJ83_04045       CDS       T05579                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dwu  Deinococcus wulumuqiensis
Pathway
dwu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dwu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DVJ83_04045
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dwu03021]
    DVJ83_04045
   03019 Messenger RNA biogenesis [BR:dwu03019]
    DVJ83_04045
Transcription machinery [BR:dwu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     DVJ83_04045
Messenger RNA biogenesis [BR:dwu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DVJ83_04045
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 AAA_22 NACHT Spore_III_AA ATPase_2 AAA AAA_16 OB_RNB MMR_HSR1 AAA_24 FeoB_N
Other DBs
NCBI-ProteinID: AXG98473
UniProt: A0A345IFK1
Position
807426..808703
AA seq 425 aa
MTATDAAQALPFQELQEKILPELHLLAAGLGIENYRKMKKDALALAIMEKQADAEGQSLA
RGYLDITSDGYGFLQADLLDPGSRSVLVTAGIIKQYHLRTGDEVIGRARKPRENERYGSL
VRVEAVNGLDPEAARLRPRFDDLTPTFPDQQLVLEDPTTDDGLSLRVVDLLVPIGRGQRA
LIVAPPKAGKTTLLKKIANSIVKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFD
EPPQHHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNA
LHWPKRFLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERR
IFPALDILKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLGRMGKTRNNVEFL
SALAG
NT seq 1278 nt   +upstreamnt  +downstreamnt
gtgaccgccaccgacgccgctcaggccctgccctttcaggagttgcaggaaaaaatcctg
cccgaactgcacctgctcgcggcgggactgggcatcgagaattaccgcaagatgaaaaaa
gacgctctggcgctcgccattatggaaaagcaggccgacgccgagggccagagcctcgcc
cggggctacctcgacatcacgtccgacggctacggctttttgcaggccgacctgctcgat
ccgggcagccgctcggttctcgtgacggcgggcatcatcaagcagtaccacctgcgcacc
ggcgacgaggtgatcggccgcgcccgcaaaccgcgtgaaaacgagcgctacggttcactg
gtgcgggtggaagccgtcaacggcctggaccctgaagccgcccgcctgcgcccgcgcttc
gacgacctgaccccgacttttcccgaccagcaactcgtgctcgaagaccccaccaccgac
gacggcctgagcctgcgcgtggtggacctgctcgtgcccatcggacgcggccagcgtgcc
ctgatcgtggcgccgcccaaagcggggaagaccacgctgctcaagaaaatcgccaactcc
atcgtcaagaactaccccgacgtcacggtgatggtcctgctggtcgacgagcgccccgaa
gaagtcaccgacttccgcgaaagtgtgcagggggcgcaggtcatcgcctccaccttcgac
gagccgccgcagcaccacgtccgggtggccgagttcgtccacgaacgcgcccgccgcatc
gtggaggaggggggacacgtggtgattttgctcgactccatcacccgcctggcgcgtgcc
aacaacctcgtcacgccgcccaccggacgcaccctttcgggcggtctggactccaacgct
ctgcactggcccaagcgctttctgggtgcagcccgcaacatccgcgagggcggcagcctg
accatcctggcaacagccctggtcgaaaccggcagccgcatggacgacgtgattttcgag
gagttcaagggaaccggcaacgccgaactggtgctctcgcgccgcctggaggagaggcga
atcttcccggcgctggacatcctcaagtccggcacccgccgcgaggaactgctgctgcaa
cccgaagtcctcaagaagatgtggctgctgcgcaaggtcatcagcgacatggaccccgcc
gacgcgatggaaatgctgctgggccgcatgggaaaaacccgcaacaacgtggaattcctg
tcggccctggccggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

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