KEGG   Durio zibethinus (durian): 111303467
Entry
111303467         CDS       T05242                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
dzi  Durio zibethinus (durian)
Pathway
dzi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dzi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    111303467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dzi03400]
    111303467
Enzymes [BR:dzi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111303467
DNA repair and recombination proteins [BR:dzi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     111303467
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C BRCT PTCB-BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 111303467
NCBI-ProteinID: XP_022755487
UniProt: A0A6P5ZSH9
Position
Unknown
AA seq 1206 aa
MTEEVKLSVVVSLFTWIQKSRTSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLAVCLIDALGMSRDSSDALRLINWRKGGANTGASAGNFALVAAEILQRRQGTA
SGGLTIKELNDLLDHLASAESRAEKTAILSTLINKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRIQRHKRQDIEVGKAVRPQLARRVYDPASAWK
KLHGKEVVVECKFDGDRIQIHKNRMEIHYYSRNFLDHPEYEHGMSNIIAQNILVDRCILD
GEMLVWDSTLNRFADFGSNQEIAKAAKDGLDSERQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGHLEILVPNGGLNAHRPPGEPCWSCVTYSVDDVERFFKETIENRDEGII
LKDLGSKWEPSDRSGKWLKLKPDYIHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFLSFCRVGTGLTDDDLETVVKKLKPYFRKYEYLKKTQPSFYQVTNNSKERPD
VWIESPEKSIILSITSDIRTIRSEVFAAPYGLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTQKGTEQGNQKDGKTKRKEHTRKADKKSVHIVPSHFIRTDTSSVKGETLIFSNLM
FYFVNVPPTYSLDSFHKMIVEHGGMFSMNLNNSVTHCVAAESKGIKYQAAKFHGEIIHYS
WVLDCCSQKKLIPLQPKYFLFLSESSKKKLQQEVDQYSDPYYWDLDLADIKQLLNNIQRS
ENSNTIDYYRKKYCPKDRWSLFHSCSFYFYCSAHSLKADWQILLRLALKRLKLEVLMGGG
KISENLNHATHLVVLSAPALDVNFDSLINRLLFRFMKLRKIGFCETFEASFSFAEKNLMW
KKGFHVVGSQWLENCLEQGQKLQEDQYSLKPIEVEETNFLESKLLQNLKEAVPDFNSVQN
QVTTASPESKIKQRGGKDHLEKSISLVPPNHGNRKRRRPASNNTKEGKTVVSQAQRVPRR
RGKMSVKINEDISEESGSDDKTNEEEIEKGKGKMERYGMVGRENYEFHQNQVVEDIELSE
LEAAENASKTWCNKASDVVMCETKNDQGCKKAEKFDLMEQDEGDCGHDSAKSEKLEVMVD
PVQAMLLDMIPSLGIKHVETTNSVVENEKTGADNKAEIPVADNSEQPVKKKKVSYKDVAG
ELLKDW
NT seq 3621 nt   +upstreamnt  +downstreamnt
atgacggaggaagtgaagttgagcgtggtagtgagcctgttcacgtggatccagaagagc
agaacatcggcgaagaagcggtctaagtttcgcaaattccttgacaccttttgcaagcct
tccgactacttcagcgccatgaggcttatccttccctccctcgacagagagcgtggcact
tacggcctcaaggagtcggtgctcgccgtctgcctcattgacgctcttggcatgtccagg
gactcctccgatgctctccgtcttatcaattggcgcaagggtggtgccaacaccggcgcc
agtgctggaaacttcgctcttgtcgccgccgagattctgcagcgtaggcaaggaacggct
tccggcggactcaccatcaaggaattgaatgacttgcttgatcacttagcttcggctgaa
agcagggccgagaagactgcaatcctttctactttgattaataagacaaatgcacaggaa
atgaagtggattatcatgataattctaaaagatctcaagttgggaattagcgagaagagc
atatttcatgaatttcaccctgatgccgaagacttgtttaatgtcacatgtgacctaaaa
ttggtttgtgaaaagttaagggaccgtattcaacgtcataagcgtcaggacattgaggtt
ggaaaggcagtacgtccacaactagctaggagagtctatgatccagcttctgcatggaaa
aagcttcatggtaaggaggtagttgttgagtgtaaatttgatggtgatcgcatccaaatc
cacaaaaatagaatggagatacattactactccaggaattttcttgatcaccctgaatat
gagcatgggatgtcaaatattattgcacaaaatattttggttgataggtgtatacttgat
ggagaaatgttagtttgggattccactttaaatcggtttgccgatttcggatcaaatcag
gaaatagccaaggcagcaaaagatggccttgatagtgaaagacagttatgctatgttgca
tttgatattctttatgttggagatactagtgtcattcaccaaagcttgaaggaacgtcat
gaacttcttcaaaaagttgtaaagcctttgaagggtcatttagagattttagtgcctaat
ggtggtcttaatgcacatcgtcctcctggggaaccttgttggtcatgtgtcacatacagt
gtggatgatgttgagagatttttcaaggaaactattgaaaatagggatgaaggaatcata
cttaaagaccttggttccaagtgggaaccaagtgatagaagtggaaagtggttgaagttg
aagcctgattacattcatgctggttctgacttagatgttctcatcattggaggatattat
ggttctggacgtcgaggaggagaggtagctcaattcttagtaggcttagcagatcgtcca
gacccaaatgcttatcccaggcgatttctatccttttgcagagttggtactgggctgact
gatgatgacttggaaactgtagtaaagaaattgaagccttattttaggaaatatgaatac
ttgaagaagacacaaccaagtttttatcaagtcacaaataactcaaaagagagacctgat
gtttggattgaaagcccagagaaatcaatcattctttctatcaccagtgatatcaggact
ataaggtctgaggtatttgctgcaccatacggcctcagatttccacgcattgacagagtg
agatatgataagccttggcatgagtgccttgatgtgcaatcatttgtagaacttgtgcat
tcaagtaatggtaccactcagaaagggacagaacagggaaaccagaaagatggtaaaaca
aagcgcaaggaacacactagaaaggcagacaaaaagagtgtccatattgttccttctcat
tttattcggaccgacacatccagtgtgaagggagaaaccttaatattttcaaatcttatg
ttttactttgttaatgtgcctccaacatattctcttgattcatttcacaaaatgattgtg
gagcatgggggaatgttctcgatgaatttgaacaactcagttacccattgtgttgcagct
gaaagcaaagggatcaagtatcaggcagcaaagtttcatggagaaattatccattactct
tgggtcttggattgttgctcacaaaagaagctcattcctttgcagccaaagtactttctt
tttctttctgaatcatcaaagaagaaattacagcaagaagttgatcaatattctgaccca
tactattgggaccttgaccttgcagatatcaaacagctcttaaacaatatccaaaggtca
gagaactccaacacaattgactattatagaaagaagtactgtccaaaggatagatggtct
ctgtttcatagctgctctttttacttctactgttcagctcattctttgaaagctgattgg
caaatcttgttgagacttgcactgaagaggttaaagcttgaagttttaatgggtggtggc
aaaataagtgagaatctcaaccatgcaacccatttggtagtcctatcagcaccagcattg
gatgtgaactttgattctcttattaataggcttctttttaggtttatgaagctcagaaaa
ataggtttttgtgaaacatttgaggcaagtttctcttttgcagagaaaaatcttatgtgg
aagaaggggtttcatgttgtgggatctcagtggttggagaattgcttagagcaggggcag
aagttgcaagaagaccaatatagcttgaaacccattgaagttgaagaaacaaacttcttg
gaaagcaaactactccaaaatctgaaagaagctgtgccagatttcaacagtgttcagaac
caggttacaaccgcatctcctgaaagtaaaataaaacagagaggcggcaaagatcaccta
gaaaaatcaatttcattggtcccacctaatcatggcaacaggaagagaagacgacctgct
agcaataacacaaaggaaggaaagacagttgtaagccaagctcaaagagtaccaaggcgt
cgtggaaagatgtctgttaagattaatgaagacatatcagaggaaagtggttctgatgac
aaaacaaatgaggaagaaatagagaaaggtaaagggaaaatggaacgctatggaatggtt
ggtagggaaaattatgaatttcaccaaaatcaagtagtggaagatatagaattgtctgaa
ctagaggctgcagaaaatgcgagcaaaacatggtgtaataaagcttctgatgttgtgatg
tgtgaaacaaaaaatgaccaaggctgcaagaaggctgagaagttcgaccttatggagcag
gatgaaggggattgtggccatgacagtgcaaagtcagaaaagctagaagttatggttgat
ccggttcaggccatgttactggacatgattccaagcctcggaataaagcatgttgaaact
acaaattcagttgttgagaatgagaaaacaggtgcagataacaaagcagagattcctgtt
gcagataacagtgaacagccagtaaagaaaaagaaagtaagttacaaggatgttgccggg
gaactactcaaggattggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (8)   
   Pfam (8)   
All databases (43)   

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