KEGG   Equus caballus (horse): 100051471
Entry
100051471         CDS       T01058                                 
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
ecb  Equus caballus (horse)
Pathway
ecb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ecb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100051471 (SNRNP200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ecb03041]
    100051471 (SNRNP200)
Enzymes [BR:ecb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100051471 (SNRNP200)
Spliceosome [BR:ecb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100051471 (SNRNP200)
 Complex C
   U5 SnRNP specific factors
    100051471 (SNRNP200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 DUF603
Other DBs
NCBI-GeneID: 100051471
NCBI-ProteinID: NP_001295298
Ensembl: ENSECAG00000019675
VGNC: 23389
UniProt: F7E0H9
Position
15:12464949..12492939
AA seq 2136 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEPEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggatgtgactgcccggagcctgcagtacgagtacaaggcgaactcaaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacaggagaggtg
ctatccctggttgggaagctggagggcacccggatgggagacaaggctcaacggaccaaa
ccacagatgcaggaggaaagaagagcgaagcgaagaaagcgtgatgaggaccggcatgac
atcaacaagatgaagggctatactctgctctcggagggcattgatgagatggtgggcatc
atctataagcccaaaactaaagagacccgagagacctatgaggtgctgctcagtttcatc
caggctgcccttggagaccagccacgtgatatcctttgtggggcagctgatgaagttcta
gctgtcctaaagaatgaaaagcttcgggacaaggaaaggagaaaggagattgacctgctg
ctgggtcagacagatgatacgagataccatgtgctagtgaacctgggcaaaaagatcaca
gactacggtggagacaaggaaatccagaatatggatgacaatattgatgagacatatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgacgaggatgtgtatggggaggtt
cgcgaagaggcgtctgatgatgacatggaaggggatgaggctgtggtgcgctgcaccctc
tcggctaatcttgtagcctcaggtgaactgatgagttccaagaagaaggatctgcaccct
cgggatattgatgcgttttggctacagcggcagctcagtcgcttctatgatgatgccatt
gtgtcgcagaagaaggcagatgaagtgttggagattttgaagacggccagtgatgatcgg
gaatgtgagaaccagctggttctgctccttggtttcaacactttcgattttattaaagtg
ctgcggcagcacaggatgatgattttatactgtactttgctggctagcgcacagagtgaa
cctgaaaaggaaaggatcatgggaaagatggaagctgatccagagctatcgaagttcctc
taccagctccatgaaactgagaaggaggatctgatccgggaggaaaggtccaggagagag
cgagtgcgtcagtcccgaatggacacagatctggaaaccatggatctggaccagggtgga
gaggcactggctccacggcaggttctggacttggaggacctggtttttacccaggggagc
cacttcatggccaataaacgctgtcagcttcctgatggatcctttcgtcgccagcgcaag
ggctatgaagaggtgcatgtgcctgctctgaagcccaagcccttcggctcagaggaacaa
ctgcttccagtagagaagctgcccaagtacgcccaggctggatttgagggcttcaaaaca
ctgaatcggatccagagtaaactctaccgtgctgctctggagacagatgagaatctgctg
ctgtgtgcacctaccggtgctggtaagaccaacgtggccctgatgtgtatgctccgagag
atagggaaacacattaacatggacggcacgatcaacgtggatgacttcaagatcatctac
atcgctcccatgcggtctttggtgcaggagatggtgggcagctttggaaagcgcctggcc
acatatggcatcactgttgcagaactgactggtgaccaccagctgtgcaaagaggagatc
agtgccactcagatcattgtctgcaccccggagaagtgggacattattacccgcaagggt
ggagagcgcacctacacccagctggtgcggctcatcattctggatgagatccatcttctc
cacgacgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaagatgtccgactcattggtcttagtgccactctccccaactatgaagat
gtggccacctttctgcgtgttgatcctgccaagggcctcttctactttgataacagcttc
cgcccagtgcctctggaacagacttacgtgggcatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactcccggaaggagactgggaagacggccagggccatccgggac
atgtgcctagagaaggatactctgggtctgtttctgagagagggctcagcctccacagaa
gtccttcggacagaagctgagcagtgcaagaacctggaactgaaggatcttctgccctat
ggctttgctattcatcatgcaggcatgaccagagttgaccggacactcgtagaggatctt
tttgccgataaacacattcaggttttagtttccacagcaactctggcttggggtgtgaat
ctccctgcacatacagtcatcatcaagggcacccaggtgtacagtccagagaaggggcgc
tggacagaattgggggcactggacattctgcagatgctgggacgtgctggaagaccccag
tatgataccaagggcgaaggcatactcatcacgtctcacggggagctgcagtactatctg
tccctcctcaatcagcagcttcctatcgagagccagatggtgtcaaagctgcctgacatg
ctcaatgcggaaatcgtgctggggaacgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcctacctgtatatccgaatgctccgatccccaactctctatggcatctctcat
gatgacctcaagggagatcccctcctggaccagcgccgactggatctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtatgacaagaagacaggcaacttccag
gtgacagaactgggccgtatagctagccactactacatcaccaatgatacagtacaaacc
tacaaccagctgctcaagcccacgctgagtgagattgagcttttcagagtcttctcactg
tcctcagagttcaagaacatcaccgtgagagaggaggagaagctggagctgcagaagttg
ctggagagggtgcccatccctgtgaaggagagcattgaggaacccagtgcaaagatcaat
gtgcttctccaagccttcatctcacagctgaaattggagggctttgcactgatggccgac
atggtatatgttacacagtcggcgggccggttaatgcgtgccatctttgaaattgtcctg
aaccgaggttgggcacagcttacagacaagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaaactccctgaggaagtagtg
aagaagattgagaagaaaaacttcccctttgagcgtctatatgacttgaatcataacgag
ataggggagcttatccgcatgccgaagatggggaagaccatccacaaatatgtccacttg
tttcccaagttggagttgtcagtgcacctgcagcccatcacacgctccaccctgaaagtg
gagctgaccatcacaccagatttccagtgggatgaaaaagtccatggttcgtcagaggca
ttctggattctggtggaggatgtggacagcgaggtgatactgcaccatgagtattttcta
ctcaaggccaagtatgcccaggacgagcacctcattacgttcttcgtgcctgtctttgaa
ccgctgcctcctcagtacttcatccgtgtggtgtctgaccgctggctctcttgtgagacc
cagctgcctgtctctttccggcatctgatcctaccagagaagtacccccctccaaccgag
cttctggacctgcagcccttgcccgtgtcggccctgagaaacagtgcctttgagagcctt
taccaagataaatttcccttcttcaatcccatccagacccaagtgtttaatactgtgtac
aacagtgatgacaacgtgtttgtgggggcccccacgggcagcgggaagaccatctgtgca
gagtttgccatcctgaggatgctgctgcagaactcggaggggcgctgtgtctacatcacc
cccatggaggctctggcagagcaggtttacatggactggtatgagaagttccaggatagg
ctgaacaagaaagtggtgctcctgacgggggagaccagcacggacctgaagcttctgggc
aaaggcaatatcatcatcagcacccctgagaagtgggacatcctttcccggcggtggaag
cagcgcaagaatgtccagaacatcaacctctttgtggtggatgaggtccaccttatcggg
ggcgagaatgggcctgtcttagaagtgatctgctcccgtatgcgctacatctcctcccag
attgagcgacccattcgcattgtggcacttagctcctcgctctcaaatgctaaggatgta
gcccactggcttgggtgcagtgccacctccactttcaacttccaccctaacgtgcgtccc
gtacccttggagctgcacatccagggcttcaacattagccatacacagactcgcctgctg
tccatggccaagccggtataccatgctatcaccaagcactctcctaagaagcctgtcatt
gtttttgttccatctcgcaagcagacccgcctcactgcgattgacatcctcaccacatgt
gcagcagacatccagcggcagaggttcttgcactgcaccgagaaggatctgatcccatac
ctggagaaactaagtgacagcacactcaaggaaacactgttgaatggggtgggctacctg
catgaggggctcagccccatggagcgacgcctagtggaacagctcttcagctcaggggct
atccaagtggtagtagcttctcggagtctctgctggggcatgaatgtggccgcccacctg
gtgatcatcatggatactcagtactacaatggcaaaatccacgcgtatgtggattacccc
atctatgacgtgctgcagatggtggggcatgccaaccgccctttgcaggatgatgagggg
cgctgcgttatcatgtgtcagggctccaaaaaggatttcttcaaaaagttcctatatgag
cccttgccagtagagtctcatctggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccattgagaataagcaggacgctgtggactacctcacctggacctttctg
taccgccgcatgacacagaaccccaattattacaacctgcagggcatctcccatcgtcac
ctgtctgaccacctgtcagagctcgtggagcagaccctgagtgacctggagcagtccaag
tgcatcagcattgaggatgagatggatgtggcacctctgaacctgggcatgattgctgcc
tattattatatcaactataccaccattgagctcttcagcatgtccctgaatgccaagacc
aaggtgcgtgggcttatcgagatcatctccaatgcagcagagtatgagaacattcccatc
cggcaccatgaagacaacctcttgcggcagttggctcagaaggtgccccacaagctgaat
aaccctaagttcaacgatccgcacgtcaagaccaacctgcttctgcaggctcacctgtcc
cgcatgcagctgagtgctgagctgcagtcagatacagaggaaatccttagcaaggcaatc
cggctcatccaggcctgcgtagatgtcctctccagcaatgggtggctcagtcctgctctg
gcagctatggaactggcccagatggtcacccaagccatgtggtccaaggactcctacctg
aaacagctgccacacttcacctcagagcatatcaaacgttgcacagacaagggagtggag
agtgttttcgacatcatggagatggaggacgaagaacgaaatgcattgcttcagttgtct
gacagccagattgcggatgtggcccgcttctgtaaccgctaccctaatatcgagctgtct
tacgaagtggtggataaggacagcatccgcagtggtgggccagttgtggtgctggtgcag
ctagagcgagaggaggaagtcacaggccccgtgattgcacctctctttccacagaaacgt
gaagagggctggtgggtggtgattggagatgccaagtccaatagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgactttgtggccccagccactggc
gcccacaactacactctgtacttcatgagtgatgcttacatgggatgtgaccaggaatac
aaattcagcgtggatgtgaaagaagctgagacagacagtgactcggattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (11)   
   Pfam (11)   
All databases (47)   

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