KEGG   Equus caballus (horse): 100059688
Entry
100059688         CDS       T01058                                 
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
ecb  Equus caballus (horse)
Pathway
ecb03015  mRNA surveillance pathway
ecb03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ecb00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100059688 (CPSF6)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100059688 (CPSF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecb03019]
    100059688 (CPSF6)
Messenger RNA biogenesis [BR:ecb03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     100059688 (CPSF6)
SSDB
Motif
Pfam: RRM_1 PRP38_assoc
Other DBs
NCBI-GeneID: 100059688
NCBI-ProteinID: XP_023499749
Ensembl: ENSECAG00000015988
VGNC: 16837
Position
6:85339536..85370904
AA seq 589 aa
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVK
GTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGS
AIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRS
REKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq 1770 nt   +upstreamnt  +downstreamnt
atggcggacggcgtggaccacatcgacatctacgcggacgtgggcgaggagttcaaccag
gaagctgaatatggtgggcatgatcagatagatttatatgatgatgtcatctctccatct
gcaaataatggagatgccccggaagacagggattacatggatactctcccaccaaccgtt
ggtgacgacgtgggtaaaggagcagcaccgaacgttgtgtatacgtacaccgggaagaga
attgctttgtacattgggaacctaacgtggtggacaacagatgaagatttaactgaagca
gttcattctctgggagtaaatgatattttggagataaaattttttgaaaatcgggcaaat
ggccagtcaaaggggtttgcccttgttggtgttggatctgaagcatcctcaaaaaagtta
atggatctgttgcctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcagttcacgcgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcccggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccaggaaatttgatcaagcatcttgttaaa
ggaactcggcctttgttcctggaaactaggattccatggcatatggggcacagcatagag
gaaatacccatttttggcctaaaagctggacagactccaccgcgtccacccttaggtcct
ccaggcccacctggtccaccaggtcctccacctcctggtcaggttctgccgcctccttta
gctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcctggacaacct
tttgggcagcctccattgggtccgcttcctcctggtcctccacctccagttccaggctac
ggcccccctcctggtccaccacctccacaacagggaccacctccacctccaggccccttt
ccacctcgcccacctggccctcttgggccaccccttacacttgctcctcctccgcatctt
cctggaccacctccaggtgctccaccgccagctccacatgtgaacccggctttctttcct
ccaccaaccaacagcggcatgcctacatcagatagccggggtccaccaccgacagatccc
tatggccggcctccgccatatgataggggtgactatggacctcctggaagggaaatggat
actgcaagaacaccattgagtgaagctgagtttgaagaaatcatgaatagaaatagagca
atctcaagcagtgctatttcaagagctgtgtctgatgccagtgctggtgattatgggagt
gctattgagacactggtaactgcgatttctttaattaaacagtctaaagtatctgccgat
gatcgttgcaaagtccttattagctctttgcaagattgccttcatggaattgaatccaag
tcttacggttctggatcaagaagacgtgaacgatcaagagagagggaccatagtagatca
cgagaaaagagtcgacgtcataagtcccgtagtagagatcgtcatgatgattattataga
gagagaagcagagaacgagagagacaccgggaccgtgatcgtgaccgagaccgagagcgt
gaccgcgagcgcgagtatcgtcatcgctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (43)   

Download RDF
DBGET integrated database retrieval system