KEGG   Escherichia coli K-12 W3110: JW1023
Entry
JW1023            CDS       T00068                                 
Symbol
csgD
Name
(GenBank) DNA-binding transcriptional activator in two-component regulatory system
  KO
K04333  LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
Organism
ecj  Escherichia coli K-12 W3110
Pathway
ecj02026  Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:ecj00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02026 Biofilm formation - Escherichia coli
    JW1023 (csgD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ecj03000]
    JW1023 (csgD)
Transcription factors [BR:ecj03000]
 Prokaryotic type
  Helix-turn-helix
   LuxR family
    JW1023 (csgD)
SSDB
Motif
Pfam: GerE VpsT-like_REC Sigma70_r4_2 HTH_24 HTH_40 HTH_23
Other DBs
NCBI-ProteinID: BAA35830
UniProt: P52106
Position
complement(1102787..1103437)
AA seq 216 aa
MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNG
LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
NT seq 651 nt   +upstreamnt  +downstreamnt
atgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaatcttct
ttgcaggcgacagctctcttgcagcaccttaaacaatcgctggcaattacaggaaaatta
cataatattcaacgttctctggacgatatctcttcaggctctattattcttctggatatg
atggaagcggataaaaagcttatccattattggcaggatactttgagcaggaaaaacaac
aatatcaaaatattgttgctaaatacgcctgaagattacccgtaccgcgacattgaaaac
tggcctcatatcaacggcgttttttattccatggaggatcaagaacgtgttgtcaatggg
ttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagctacctgatt
acgcattcaggtaactatcgttataacagcacggaatcagccctccttactcatcgggaa
aaagagatcctgaataagctgcgtatcggcgcgtctaataacgagatcgctcgttcgttg
ttcatcagcgaaaatacggttaaaacgcatctttataatcttttcaagaagatagccgta
aaaaaccggacacaagcggtttcctgggcaaacgataacctcaggcgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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