KEGG   Escherichia coli 55989 (EAEC): EC55989_4734
Entry
EC55989_4734      CDS       T00826                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
eck  Escherichia coli 55989 (EAEC)
Pathway
eck03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eck00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EC55989_4734 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eck03019]
    EC55989_4734 (rnr)
   03016 Transfer RNA biogenesis [BR:eck03016]
    EC55989_4734 (rnr)
Enzymes [BR:eck01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EC55989_4734 (rnr)
Messenger RNA biogenesis [BR:eck03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EC55989_4734 (rnr)
Transfer RNA biogenesis [BR:eck03016]
 Prokaryotic type
  tRNA degradation factors
   EC55989_4734 (rnr)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind OB_Dis3 MetOD2 RNA_pol_Rbc25 Sucrose_synth YqfQ
Other DBs
NCBI-ProteinID: CAV01657
UniProt: B7LC38
Position
4852221..4854662
AA seq 813 aa
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggtagaactgcacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgc
gcgatggagcgcgatggtcaactggtcttcactcgtcgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaagggcgtaaagatgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggctcagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgt
attgtccgtgtactggtgccaaaaaccagccaaattgttggtcgctactttaccgaagcg
ggcgtcggctttgtggttcctgacgatagccgtctgagcttcgatatcttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggttgttgaactgacccaacgcccg
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtgctgggcgacaatatgggcacc
ggcatggcggttgatatcgctctgcgtacccatgaaattccgtacatctggccgcaggct
gttgagcaacaggttgccgggctgaaagaagaagtgccggaagaagcaaaagcgggccgt
gtcgatttgcgcgatttaccgctggtcaccattgatggcgaagacgcccgtgactttgac
gatgcggtttactgcgagaaaaaacgcggcggcggctggcgtttatgggtcgcgattgcc
gacgtcagctactatgtgcgcccgccaacgccgctggacagagaagcgcgtaaccgtggt
acgtcggtgtacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggc
ctgtgctcgctcaacccgcaggtagaccgcctgtgtatggtgtgcgagatgacggtttcg
tcgaaaggccgcctgactggctacaaattctacgaagcggtgatgagctctcacgcgcgt
ctgacctacaccaaagtctggcatattctgcagggcgatcaggatctgcgcgagcagtac
gcaccgctggttaagcatctcgaagagttgcataacctctacaaagtgctggataaagcc
cgtgaagaacgtggcgggatctcatttgagagcgaagaagcgaagtttattttcaacgct
gaacgccgtattgagcgtatcgaacagactcagcgtaacgacgcacacaagttaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagccaaagaacca
gcattgttccgtattcacgacaagccgagcaccgaagcgattacctctttccgttcagta
ctggcggagctggggctggaactgccgggcggtaacaagccggaaccgcgtgactacgcg
gagctgctggagtcggttgccgatcgtcctgatgcagaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccagaaaaccgtggtcacttcggtctggcattg
cagtcctatgcgcactttacttcgccgattcgtcgttatcctgacctgacgctgcaccgc
gccattaaatatctgctggcgaaagagcaggggcatcagggcaacaccacggaaaccggc
ggctaccattattcgatggaagagatgctgcaactgggtcagcactgttcgatggcggaa
cgtcgtgccgacgaagcaacgcgcgatgtggctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtaatttccagcgtcactggctttggcttcttc
gtccgtctggacgacttgttcattgatggtctggtccatgtctcttcgctggacaatgac
tactatcgctttgaccaggtagggcaacgcctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgtcgaagcggttaatatggacgagcgcaaaatc
gactttagcctgatctccagcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgag
aaagcgaaaaaaggcgatgcaggtaaaaaaggcggcaagcgtcgtcaggtcggtaaaaag
gtaaactttgagccagacagcgccttccgcggtgagaaaaaaacgaagccgaaagcggcg
aagaaagacgcgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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