KEGG   Escherichia coli APEC O78 (APEC): APECO78_22070
Entry
APECO78_22070     CDS       T02445                                 
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ecoa  Escherichia coli APEC O78 (APEC)
Pathway
ecoa03030  DNA replication
ecoa03410  Base excision repair
ecoa03420  Nucleotide excision repair
ecoa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ecoa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    APECO78_22070
   03410 Base excision repair
    APECO78_22070
   03420 Nucleotide excision repair
    APECO78_22070
   03430 Mismatch repair
    APECO78_22070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ecoa03032]
    APECO78_22070
   03400 DNA repair and recombination proteins [BR:ecoa03400]
    APECO78_22070
Enzymes [BR:ecoa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     APECO78_22070
DNA replication proteins [BR:ecoa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     APECO78_22070
DNA repair and recombination proteins [BR:ecoa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     APECO78_22070
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     APECO78_22070
   MMR (mismatch excision repair)
    DNA ligase
     APECO78_22070
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      APECO78_22070
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: AGC89131
Position
complement(4578499..4580016)
AA seq 505 aa
MEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRE
RSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANS
TLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDR
LKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRGAKEPESRHWLPG
QAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ
EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFIS
RLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWH
QFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI
EWKENAQIKKLGSWLAAQQITGFEP
NT seq 1518 nt   +upstreamnt  +downstreamnt
gtggaagacggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgcttt
gggagcgagccccgcgacgtgatgatgccgcctttaaatggtgcggttatgcatccggtt
gcccatacgggtgtacgcaaaatggtggataaaaacgcattaagtctgtggatgcgagaa
cgtagcgatctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgg
gacgggaaactgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacg
cagaaagttagcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagt
acgcttcagggggaaatatttctccagcgcgaggggcatatccaacaacaaatgggggga
ataaatgcccgcgcaaaagttgctggcttgatgatgcgccaggacgatagcgacacgctg
aattctctgggcgtttttgtctgggcatggccggatggaccgcagttaatgtctgatcgt
ttaaaagagctggctaccgcaggttttactctaacgcagacgtatacccgtgcggtgaaa
aatgctgatgaagttgcgcgcgtacgcaatgagtggtggaaagcggaattacccttcgtc
accgatggcgtagttgtgcgaggggcgaaagaacccgaatcccgccattggctaccaggc
caggcagaatggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaag
gcgattcagtttgcggtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacct
gtcatgctggatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcag
gagtgggatattgcgcctggtgatcagatcctcgtcagccttgccggtcagggtattcct
cgcattgatgatgtggtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaac
cgctttaactcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttca
cgcttagtctggctggggtcaaaacaggttctggggctggatggcattggtgaggccggc
tggcgcgcgctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacg
ccagagcaattacagaacacgccggggatcgcgaaaagtaaaagtgcgcagctatggcat
cagtttaatctggctcgtaagcagccttttactcgctgggtgatggcaatgggaataccg
ctaacccgggcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagc
acggagcagttctggcagcagctgccggggactggatcggggcgcgccagacaggttatt
gaatggaaggaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatc
acaggttttgaaccttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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