KEGG   Escherichia coli O81 ED1a (commensal): ECED1_0153
Entry
ECED1_0153        CDS       T00827                                 
Symbol
hrpB
Name
(GenBank) ATP-dependent (RNA) helicase
  KO
K03579  ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
Organism
ecq  Escherichia coli O81 ED1a (commensal)
Brite
KEGG Orthology (KO) [BR:ecq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecq03019]
    ECED1_0153 (hrpB)
Enzymes [BR:ecq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     ECED1_0153 (hrpB)
Messenger RNA biogenesis [BR:ecq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     ECED1_0153 (hrpB)
SSDB
Motif
Pfam: HrpB_C DEAD Helicase_C HA2_N AAA_22
Other DBs
NCBI-ProteinID: CAR06375
UniProt: B7MP10
Position
168106..170535
AA seq 809 aa
MSSLPVAAVLPELLAALDGASQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA
ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS
FPVERRYLPLPAHQRFDEAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLTSRIGSDV
LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP
RTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSDLSGL
LMELLQWGCGDPAQMSWLDQPPTVNLLAAKRLLQMLGALDGERLSAQGQKMAALGNDPRL
AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG
GEADSSLIAPLLARAYADRIARRRGQDERYQLANGMGAMLDADDALSRHEWLIAPLLLQG
SASPDARILLALPVDIDELVQRCPQLVQQSDTVAWDDAQGTLKAWRRLQIGQLMVKVQPL
AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAT
LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWVMQQRLDSELPAHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq 2430 nt   +upstreamnt  +downstreamnt
gtgtcgtcgttgcccgttgctgccgtcttacctgagttacttgctgccctcgatggtgca
tcgcaggtgttattaagtgcgccgaccggggccgggaaatcaacctggctgccgctgcaa
ctgctggcgcatcccggcattaacgggaaaattatcctgctggagccgcgtcgtctggcg
gcgcgtaacgttgcgcaacgactggcggagctgcttaacgaaaagccaggcgataccgtt
ggctaccggatgcgtgcgcaaaactgcgtcgggccgaatacccgcctggaagtggttacc
gaaggcgtgctgacgcggatgatccagcgtgacccggaactgagtggtgttggattggtg
atccttgatgaatttcatgagcgcagcttgcaggcggatttggcattggcgttgttactc
gatgtgcaacaaggtctgcgtgatgaccttaaactgctgattatgtcggctacgctggac
aacgaccgcttgcagcaaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcg
tttccggttgaacgccgttatttgccgctgcccgctcatcagcgttttgacgaagccgtc
gcggttgctaccgccgaaatgctgcgtcaggaaagtggatcattactgttatttttacct
ggcgtcggagaaattcagcgtgtgcaggaacaactgacttcacgcatcggcagtgatgtg
ttgctctgcccgctgtatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccg
gcaccgcaagggatgcgcaaagtggtgctggcgaccaatattgctgaaacaagtttaacc
atcgaaggtattcgtctggtggtggattgtgcccaggaaagggtggcgcgttttgatccg
cgtacagggcttacgcggttgattactcaacgcgttagtcaggcgtcgatgacgcaacgt
gccgggcgtgccgggcgtctggagccgggtatctgcctgcatttaatcgccaaagaacaa
gcagaacgcgctgccgcgcaaagtgaaccggagatcttacaaagcgatctttccggtttg
ctgatggaattactgcaatggggatgcggcgatccggcgcagatgagctggctggatcaa
ccgccaacggtgaatctactggccgcgaaacgcctgttacagatgctgggggcgctggat
ggcgaacgcctaagcgcgcaagggcaaaaaatggcagcgctgggtaacgatccgcgttta
gcggcaatgctggttagcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgcc
gccattctcgaagagccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgc
aatcaacccgcctggcagcaacgtagtcagcaactgttaaaacgcttaaacgtacgcggc
ggtgaggcagacagttcgcttatcgcgccgctacttgccagagcgtatgccgatcgcatt
gctcgtcgccgtgggcaagatgaacgctatcaactggcgaacggcatgggggcgatgctc
gatgccgacgatgcgctaagccgccacgaatggttgatcgcaccgttattattgcagggc
agcgcctcgccggatgcgcggattttactggcgctgccggtcgatattgatgagttagta
caacgctgcccgcagctggtacagcagtctgacactgtggcgtgggatgacgcgcaaggt
acgctgaaagcctggcgtcggctgcaaattggtcagttgatggttaaagtgcaaccgctg
gcgaaaccctcggaagacgagttgcatcaggcgatgcttaacggcattcgtgataaaggt
ttaagcgtgctcaactggacggcggaagcggaacagctacgcttgcgtttgttatgcgcc
gcaaagtggttgccggaatatgactggccagcggttgatgatgaaagtttgttggcgacg
ctggaaacgtggctactgccgcatatgacaggcgtacattcgctacgcggcctgaaatca
ctcgatatttatcaggcactgcgtggattacttgattgggtaatgcagcaacgtctggat
agtgaattgcctgcgcattacactgtgccgacgggaagccggatcgccattcgttaccat
gaagataacccgcccgcgctggcggtgagaatgcaggagatgtttggtgaggccactaat
ccgactatcgcccaggggcgcgtaccgttggtgctggagttgctttcccctgcccaaagg
ccgctgcaaatcacgcgtgatttgagcgccttctggaaaggagcgtaccgtgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgacccggcaaacaccgca
ccgacgcgacgaacgaaaaagtattcgtga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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